Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_A21
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.008
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 33 0.058
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 31 0.24
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 29 0.72
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 29 0.95
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 28 1.3
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 27 2.2
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 27 2.9
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.8
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 5.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 5.1
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 8.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 8.9
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 8.9
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.008
Identities = 25/101 (24%), Positives = 48/101 (47%)
Frame = +2
Query: 197 SKRNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCNGSPKSSKKGIHLENKKRERQITP 376
SK+ + AA + +KT + KK K +A + SP+ SKK + + K ++++ +
Sbjct: 29 SKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRAS----SPEPSKKSVKKQKKSKKKEESS 84
Query: 377 SPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKAD 499
S ++SS E E S ++ S+ S E++ +
Sbjct: 85 SESESESSSSESESSSSESESSSSESESSSSESSSSESEEE 125
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 32.7 bits (71), Expect = 0.058
Identities = 20/90 (22%), Positives = 38/90 (42%)
Frame = +2
Query: 173 THIKIIKMSKRNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCNGSPKSSKKGIHLENK 352
+HI+ S + G FT+ P + K+ K E+T SPK K
Sbjct: 476 SHIQKYASSLTGAKGGQLKRQTIFTQGPNSTKESKQAVKEETSVKNSPKGKNTKNGKAEK 535
Query: 353 KRERQITPSPELKKASSDEEEVISLPTKRK 442
++ + + +P+L KA E+ + +++
Sbjct: 536 EKPGKKSKAPKLSKAEQIRAEIAARKVEKE 565
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 311 SPKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVEN 490
S SS K H EN K IT + +D P + ++ PV + + +V +
Sbjct: 563 SKSSSSK--HKENDKASVSITTTTTPSITPADPVPTSPKPLAIEPVKRKPVHAGNLEVTS 620
Query: 491 KADNKIGTT 517
+DNK+G T
Sbjct: 621 VSDNKLGAT 629
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 284 ATEDTDCNGSPKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPV 463
A ED+D G + I N E ++ S + +SS EE++ +P +R N +
Sbjct: 448 AEEDSDDEGEFMEASGLIESTN---ELHLSDSESSETSSSSEEDMEFIPFSARRDSANTI 504
Query: 464 DSDDSD 481
+S+D D
Sbjct: 505 NSEDFD 510
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 28.7 bits (61), Expect = 0.95
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 179 IKIIKMSKRNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCNGSPKSSKKGI 337
I +I R ST ++ FN P +N LK+DA E+TD + P S K+ I
Sbjct: 511 IPLISTFTRLSTRKSSNDFNSSNSRPSSNA-LKSDANENTD-SSLPPSKKEFI 561
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 203 RNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCNGSPKSSKKGIHLENKKRERQITPSP 382
+ STG NT+FN P K ++ + + + SP +I+P+P
Sbjct: 210 KESTGILNTIFNSQNSLTPQKKIQSSERSVENEFLASPMDPSLSKLFTKTTNTEKISPTP 269
Query: 383 -ELKKASSDEEEV 418
K S +E V
Sbjct: 270 FSTPKRKSKKETV 282
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Frame = +2
Query: 257 PTNKKLKADATEDTDCNGSPKSSKKGIHLENKKRERQITPSPE-----LKKASS--DEEE 415
PT + DA D + K + + +++ E+ + LKK DEEE
Sbjct: 46 PTTSNEEEDAISDMEDKEDVSFGSKILRVSHQEVEKPTLSATVGRVSFLKKMPKLEDEEE 105
Query: 416 VISLPTK----RKRIRLNPVDSDDSDVEN 490
+++ + RKR R N SDD +VEN
Sbjct: 106 ILAKKREEQKLRKRSRQNDDGSDDDEVEN 134
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 308 GSPKSSKKGIHLENKKRERQITPSPELKKASSDEEE 415
GS +SSK ++N++ + TPSP ++ SDE+E
Sbjct: 299 GSLRSSK----MDNRRSKYADTPSPRRSRSYSDEDE 330
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +2
Query: 284 ATEDTDCNGSPKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPV 463
A++D +G +S+ L+N + + L++A E EV +L ++ R+R +
Sbjct: 106 ASQDQAQSGLNSNSESPDDLQNAQTGETLRGFDRLREAGFTETEVNNLRSQFHRLRGTNL 165
Query: 464 DSDDSDVENKADN 502
DS D +A++
Sbjct: 166 DSLTEDAIREAED 178
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 221 ANTLFNYFTKTPPTNKKLKADATEDTD--CNGSPKSSKKGIHLENKKRERQITP 376
A T FN K P K+ A E PKSSK+ +LEN K + P
Sbjct: 947 AMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLPKSSKEAAYLENLKDGEIVAP 1000
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 290 EDTDCNGSPKSSKKGIHLENKKRERQITPSPELKKASSDE 409
EDT+ +P ++ IH+ ++KR ++ + KK S+ E
Sbjct: 748 EDTNNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKE 787
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 158 TNEDTTHIKIIKMSKRNSTGAANTLFNYFTKTPPTNKKLK 277
TNEDT+ + ++S R L N+ PP+ K L+
Sbjct: 368 TNEDTSIVLDTQLSHRLLPSLRKPLLNFVKVHPPSQKLLR 407
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 335 IHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDV 484
+H E+ K + +ITP K + E S+ + + P++ DD V
Sbjct: 81 LHSESSKNDSEITPDINRSKVNPQEYSEFSVASPQTISPSLPLNLDDETV 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 248 KTPPTNKKLKA-DATEDTDCNGSPKSSKKGIHLENKKRERQITPS--PELKKASSDEEE 415
++P K+L A +D + + PK KKG +N P PE++ + E+E
Sbjct: 126 ESPQGPKELTAVTELDDDEFDYKPKKGKKGKKAQNNNESEAAAPPEIPEVRVKTKKEKE 184
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 338 HLENKKRERQITPSPELKKASSDEEEV-ISLPTKRKRI---RLNPVDSDDSDVENKADNK 505
H +N+ E+ + +PEL K + EE+ +S + + LN + DD D +A N+
Sbjct: 435 HSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMDGYKEAFNE 494
Query: 506 I 508
+
Sbjct: 495 L 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,759
Number of Sequences: 5004
Number of extensions: 37683
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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