Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A19
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   4.3  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   4.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   4.3  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    26   7.5  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    25   9.9  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    25   9.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   9.9  

>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +2

Query: 341 QLAGNARQNXXXXXXXXXXXXXNAIPKRGRSLLTNMTRTENLDHLSINSLTKTTNFSGLA 520
           +L GN R N             +     G++L  N          + N+  KTTNF+G+ 
Sbjct: 85  ELKGNKRDNTFVTSLFTGDDSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQ 144

Query: 521 LPLALVRSMSN 553
           L   L   ++N
Sbjct: 145 LDTQLADHLNN 155


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 524 PLALVRSMSNGNHSPSGGPYGRL 592
           P+A+VR  +NGNH  SG   G++
Sbjct: 174 PIAIVRFSNNGNHFASGSWGGQV 196


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 277 DKGPCTPDAKEFKKVIPEALETTCGKCSPKQKQLIKTVIKAVIERHPEAWEE 432
           +KGP TPD++   + + E L     +     KQL   V++A  + H E   E
Sbjct: 180 EKGPLTPDSEYAARQLTEELANKSSQEEGVDKQL--RVVEATEKEHEEDGNE 229


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 700 ENLTKHAMSLN*LNLKYLKFHSIMTKLRYF 611
           +NL K++ SL    + Y  FHS +  L+YF
Sbjct: 242 KNLPKNSASLILPPINYDTFHSFLDSLKYF 271


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 140 IFTDNTI*DQKYRWNEILLYPHKTQNIQREALSLFLILPCW 18
           IFT+N +   +      L YP    N    A ++ LI+PCW
Sbjct: 29  IFTENVVCPTR------LHYPIDEDNPSSTANNILLIMPCW 63


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 163 VGMAMVSAEFYSSRYDDFDV---KPLVENDRILQSYTNCFLD 279
           +G+ + S+EFY     D D+   KP  EN    Q  T+ +++
Sbjct: 243 IGLDVASSEFYVDGKYDLDIKAAKPKPENKLTYQQLTDLYVE 284


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 364  LASISRKLFPELRVSLF*IPWHLGYTVLCQESN*CSFVKF 245
            LA I +K+FP+L + L   PW +   +L  E     F+ F
Sbjct: 1232 LAEILKKIFPKLTLVLIDDPWSILKKLLQNEQFNVVFLHF 1271


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 334 LETTCG-KCSPKQKQLIKTVIKAVIERHPEAWEELVNKYDKDRKFRPS 474
           +E  CG  C+    Q++ T +K  +  H E   +    + K +KF  S
Sbjct: 286 IELFCGGPCTVGLGQVVSTELKEPMRSHSEIANDKAKHFKKSKKFYSS 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,533
Number of Sequences: 5004
Number of extensions: 66931
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)