Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A16
         (484 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   174   6e-44
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   174   6e-44
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   174   6e-44
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   166   1e-41
AE014297-2942|AAF55859.1|  338|Drosophila melanogaster CG5802-PA...    36   0.022

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  174 bits (423), Expect = 6e-44
 Identities = 86/115 (74%), Positives = 91/115 (79%)
 Frame = +3

Query: 33  PPNXDAKASAKQPQKTQNXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEV 212
           PP  DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TYEKLYKEV
Sbjct: 2   PPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEV 61

Query: 213 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
           P YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 62  PAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  174 bits (423), Expect = 6e-44
 Identities = 86/115 (74%), Positives = 91/115 (79%)
 Frame = +3

Query: 33  PPNXDAKASAKQPQKTQNXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEV 212
           PP  DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TYEKLYKEV
Sbjct: 2   PPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEV 61

Query: 213 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
           P YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 62  PAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  174 bits (423), Expect = 6e-44
 Identities = 86/115 (74%), Positives = 91/115 (79%)
 Frame = +3

Query: 33  PPNXDAKASAKQPQKTQNXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEV 212
           PP  DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TYEKLYKEV
Sbjct: 2   PPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEV 61

Query: 213 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
           P YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 62  PAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  166 bits (404), Expect = 1e-41
 Identities = 83/111 (74%), Positives = 88/111 (79%)
 Frame = +3

Query: 45  DAKASAKQPQKTQNXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEVPQYK 224
           DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TYEKLYKEVP YK
Sbjct: 2   DAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYK 61

Query: 225 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
           LITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 62  LITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


>AE014297-2942|AAF55859.1|  338|Drosophila melanogaster CG5802-PA
           protein.
          Length = 338

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 215 WDFLVQFLICGFIKQHLVVQLVTNFSFGPLLLLGFAATGSFLLILCFLRLFGRSL 51
           W  L    +CG + Q  +  +V   SFGPL       T  F  +LC + LFG  L
Sbjct: 239 WTHLSLIAVCGVLGQFFIFLMVA--SFGPLACSVVTTTRKFFTVLCSVLLFGNVL 291


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,687
Number of Sequences: 53049
Number of extensions: 369216
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)