Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_A15
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 33 0.085
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.34
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.0
02_04_0382 - 22501041-22501279,22501717-22501810 29 2.4
08_02_1289 - 25923916-25924586,25925148-25926630 27 5.6
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 5.6
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 27 7.3
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 7.3
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 9.7
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 33.5 bits (73), Expect = 0.085
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 94 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPG 264
QP Y P + P V PP Y P +G P N + Y + P GRP P P G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445
Query: 265 ARG 273
A G
Sbjct: 446 AGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 115 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 264
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 76 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDRPQGRPYF 243
P P+ QP G Y P Y P ++ P Y P G Y +PQG+PY
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286
Query: 244 KPTPF 258
P P+
Sbjct: 287 PPQPY 291
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 91 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 258
A+ T +G P ++ + PP D P+ + Y+P + YY D P Y+ P P
Sbjct: 28 AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86
Query: 259 PGARGG 276
P GG
Sbjct: 87 PYYGGG 92
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 387 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 238
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 201 RCILRGPSPR-PTLLQAYPFPWCSRW 275
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/73 (20%), Positives = 34/73 (46%)
Frame = -1
Query: 312 YFVINFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRA 133
YF I F+ + + PT + + + + L V+C+ ++ V +R +++G +
Sbjct: 80 YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYGEDVQAQV 138
Query: 132 VVNRFVAVSYSRL 94
+N Y+R+
Sbjct: 139 TLNLPSGKLYTRI 151
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPT-PFP 261
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 174 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 293
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,370
Number of Sequences: 37544
Number of extensions: 247814
Number of successful extensions: 534
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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