Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_A15
(462 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF107108-1|ABK81123.1| 761|Homo sapiens sphingosine kinase-2 va... 31 1.9
BC010671-1|AAH10671.1| 618|Homo sapiens SPHK2 protein protein. 31 1.9
BC006161-1|AAH06161.1| 654|Homo sapiens sphingosine kinase 2 pr... 31 1.9
AF245447-1|AAF74124.1| 618|Homo sapiens sphingosine kinase type... 31 1.9
BC100766-1|AAI00767.1| 180|Homo sapiens Xg blood group protein. 31 2.5
U82130-1|AAC52083.1| 390|Homo sapiens tumor susceptibility prot... 30 3.4
BC002487-1|AAH02487.1| 390|Homo sapiens tumor susceptibility ge... 30 3.4
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 30 4.5
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 30 4.5
AY048121-1|AAK85703.1| 659|Homo sapiens RAS guanyl releasing pr... 29 7.8
AY048119-1|AAK85701.1| 673|Homo sapiens RAS guanyl releasing pr... 29 7.8
>EF107108-1|ABK81123.1| 761|Homo sapiens sphingosine kinase-2
variant protein.
Length = 761
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 14 LHXFRPRLCWLWPTLKLXSMTPIHSLP 94
LH +R RL +L T++ S TP HSLP
Sbjct: 431 LHTYRGRLSYLPATVEPASPTPAHSLP 457
>BC010671-1|AAH10671.1| 618|Homo sapiens SPHK2 protein protein.
Length = 618
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 14 LHXFRPRLCWLWPTLKLXSMTPIHSLP 94
LH +R RL +L T++ S TP HSLP
Sbjct: 333 LHTYRGRLSYLPATVEPASPTPAHSLP 359
>BC006161-1|AAH06161.1| 654|Homo sapiens sphingosine kinase 2
protein.
Length = 654
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 14 LHXFRPRLCWLWPTLKLXSMTPIHSLP 94
LH +R RL +L T++ S TP HSLP
Sbjct: 369 LHTYRGRLSYLPATVEPASPTPAHSLP 395
>AF245447-1|AAF74124.1| 618|Homo sapiens sphingosine kinase type 2
isoform protein.
Length = 618
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 14 LHXFRPRLCWLWPTLKLXSMTPIHSLP 94
LH +R RL +L T++ S TP HSLP
Sbjct: 333 LHTYRGRLSYLPATVEPASPTPAHSLP 359
>BC100766-1|AAI00767.1| 180|Homo sapiens Xg blood group protein.
Length = 180
Score = 30.7 bits (66), Expect = 2.5
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 52 NAQVVXNDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYY--VDRP 225
N+ + P++ QP N I RP P P +G ++G Y+ VDR
Sbjct: 41 NSDIYPKPKPPYYPQPENPNSGGNIYPRP---KPRPQPQPGNSG----NSGGYFNDVDRD 93
Query: 226 QGRPYFKPTPFPGARGG 276
GR +P P P A GG
Sbjct: 94 DGRYPPRPRPRPPAGGG 110
>U82130-1|AAC52083.1| 390|Homo sapiens tumor susceptibility protein
protein.
Length = 390
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Frame = +1
Query: 61 VVXNDPDPFFAQPTVGNGYEPID-----NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRP 225
VV D P F++P + Y P N Y+ P +P +GY P +G P
Sbjct: 133 VVFGDEPPVFSRP-ISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYP 191
Query: 226 QGRPY 240
G PY
Sbjct: 192 PGGPY 196
>BC002487-1|AAH02487.1| 390|Homo sapiens tumor susceptibility gene
101 protein.
Length = 390
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Frame = +1
Query: 61 VVXNDPDPFFAQPTVGNGYEPID-----NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRP 225
VV D P F++P + Y P N Y+ P +P +GY P +G P
Sbjct: 133 VVFGDEPPVFSRP-ISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYP 191
Query: 226 QGRPY 240
G PY
Sbjct: 192 PGGPY 196
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = +1
Query: 97 PTVGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDRPQGRP 237
PT G+ P + PYI +P Y+P YEP G Y P P
Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1617
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = +1
Query: 97 PTVGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDRPQGRP 237
PT G+ P + PYI +P Y+P YEP G Y P P
Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1617
>AY048121-1|AAK85703.1| 659|Homo sapiens RAS guanyl releasing
protein 4 variant 2 protein.
Length = 659
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 188 NLSTTVHITWTVPKADLTSSLPLSLVLAVGSKEYLRKLI 304
N+ +H +W +P ADL + L S A G + LR+L+
Sbjct: 83 NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120
>AY048119-1|AAK85701.1| 673|Homo sapiens RAS guanyl releasing
protein 4 protein.
Length = 673
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 188 NLSTTVHITWTVPKADLTSSLPLSLVLAVGSKEYLRKLI 304
N+ +H +W +P ADL + L S A G + LR+L+
Sbjct: 83 NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,236,564
Number of Sequences: 237096
Number of extensions: 1392417
Number of successful extensions: 6784
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6782
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -