Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A14
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   149   6e-37
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.25 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   3.1  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   5.4  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   9.5  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  149 bits (360), Expect = 6e-37
 Identities = 77/178 (43%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
 Frame = +3

Query: 84  VVIASAVSTPXXXXXXXXXXXXXXXXXXXXXXXXIEXAGIPKEXIKEVYIGNVCSANLGQ 263
           V I SAV TP                        +E   I    + EV++GNV SANLGQ
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65

Query: 264 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 443
            PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P+
Sbjct: 66  NPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAPY 125

Query: 444 YLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKLLDKIKMNMLSI 611
           Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A+ +  +D+   +  +I
Sbjct: 126 YAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHS-IDRASQDAFAI 182



 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +2

Query: 575 ITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEXEXYKRVNFEKF 751
           I R  QD +A++SYKR+  A   KAF  E+VPV VP  RG P  +  E E  K +N +K 
Sbjct: 172 IDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKL 231

Query: 752 TKLSTVFQKENGTVT 796
             +  VF K NGTVT
Sbjct: 232 KSVRAVF-KSNGTVT 245


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 321 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 434
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 587 DQDEYAVNSYKRSAAAYEA-KAFVDELVPVPVPQKRGAPVIFAEXEXYKRVNFEK 748
           ++ +YA +S +  A  YE  K  +  L+ +PV Q     VIF   + Y RV  EK
Sbjct: 208 NESDYA-SSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEK 261


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 281 CNICRFAKKYHMYNCKQSMC 340
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 233 WQCLFCKFGPSTCKTSCNICRFAKKYHM 316
           W C  C F     +TSC  C F    H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 356 RFHARGTYFVYSCTYGTF 303
           RF  R  Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,060
Number of Sequences: 5004
Number of extensions: 55971
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)