Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A13
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.5  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   8.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   8.5  

>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 167 IKLN*INXIMAHDLMSQFYTSLSL-PLQEKVIELTRIIDQSSSTKDLQTIFPQLINN 334
           ++L  +  ++ ++L    YT   L PL+E++  +   I + S  +D   +  + +NN
Sbjct: 100 VQLGTVRRLLEYNLEGACYTQNDLKPLKERLERIRAAIVEGSKKEDASPVVVKYLNN 156


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +2

Query: 824 TANRPLYSPSLLLISDLTGS----VINNQHTSQ 910
           TAN P+   +L  ISDLT S    ++N  HTS+
Sbjct: 331 TANLPMVQKTLRNISDLTDSQAPTILNVVHTSE 363


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 338 FSSSFSTGWDLKSITCDVNRYEFEALISFLEPQGPMF 448
           +SSS S+   LK+   D+NR+E E  I+FL  +  +F
Sbjct: 36  YSSSASSDQLLKN---DINRHEMERRIAFLNRKQALF 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,571
Number of Sequences: 5004
Number of extensions: 71702
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)