Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A08
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   0.35 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   1.8  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   2.4  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   3.2  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.6  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   7.5  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.9  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 419  SAHYLFYSLIFMNVVPNLLIL-VPIFLFALLHAASYSLTILDTLGQNSLWVARL 577
            SA   +Y  I  ++VPN+  L  P  ++A   A +  LT   +LG + LW++R+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWISRV 2064


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 214 YFIGNDVSFQGWDAFGWTSVAC 149
           Y  GN  ++ GW   GW+ + C
Sbjct: 231 YIFGNFENYSGWTNMGWSFILC 252


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 143 QQAGDTGPPKGIPALKAHIIANKID 217
           Q+ G  GP KG  A+K H I  +ID
Sbjct: 330 QRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 377 SLSREFMARFFLEDSAHYLFYSLIFMNVVPNLL 475
           S S+E +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -2

Query: 217 VYFIGNDVSFQGWD----AFGW-TSVACLLILIGHVDSRY*SSCLDN*NYIKYYEIIDKI 53
           +Y +G + S    D    A+ W TS    L   G+   R   SC+      KYY  +D +
Sbjct: 88  LYLLGTNTSVFSEDYLSNAYRWETSFHQYLAEYGYPCIRDEKSCVTISPIPKYYGKVDPV 147

Query: 52  ATQNVVRQLGTNER*IN 2
           A  +  + L  NER +N
Sbjct: 148 AQYSYTKGLPENEREVN 164


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 449 FMNVVPNLLILVPIFLFALLHAASYSLTIL 538
           F+ V+PN+ +L+P F+   +  + Y L  +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 217 RSSLGGPRNHRAVYHWIR 270
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +2

Query: 428 YLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSR 607
           Y+F  ++F     NL          +L       TI+  LG++ +   RLLIS +    +
Sbjct: 398 YIFLKMVFWTARVNLYQCFITLDSGILEDEE---TIIGNLGESCIQCVRLLISQITILEK 454

Query: 608 NILRAAALAEIV 643
                 AL EI+
Sbjct: 455 RGWLLVALLEII 466


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 40   RSVSRFYLLFHSILYNFSCPSTNFNTLNQHGRSKSASRRHWST 168
            RS S  Y L   +L +F CP  ++ T N H       +R   T
Sbjct: 4570 RSSSPCYPLLQIVLKSFECPWEHYITDNLHDTCLKIQKRELVT 4612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,517
Number of Sequences: 5004
Number of extensions: 65004
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)