Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_A08
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0095 + 759530-760123 31 1.5
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340... 31 1.5
10_01_0313 + 3447065-3448204 30 2.6
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 29 3.4
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 29 5.9
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 28 7.8
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 7.8
01_06_0956 - 33343503-33344086,33344225-33344384 28 7.8
>03_01_0095 + 759530-760123
Length = 197
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 613 SPGRGACRDRAV---PGRTYNGIVRSLRLDESVRILLLRDV--EVRVAPEPVHPQHVPRA 777
SPG G+ R + P +G LDES + V + P P HP+ PRA
Sbjct: 6 SPGAGSLRFLGLLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCCPAPPHPEGPPRA 65
Query: 778 PRGRRRTHTAP 810
P RR HT P
Sbjct: 66 P---RRAHTVP 73
>01_06_0912 +
32933362-32933515,32933628-32933697,32933893-32934035,
32934127-32934637,32934693-32934729,32935254-32935350,
32936774-32937153
Length = 463
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = +1
Query: 598 PVAEHSPGRGACRDRAVPGRTYNGIVRSLRLDESVRILLLRDVEVRVAPEPVHPQHVPRA 777
PV E SPG A R A + +R R + ++ + V V P P Q V A
Sbjct: 164 PVDEDSPGEPASRSTAPLKKDLPRGLREERKKQQREVVKVVSKAV-VVPAPAPEQKVKGA 222
Query: 778 PRGRRRTHTAP 810
GR +HT P
Sbjct: 223 ASGRISSHTPP 233
>10_01_0313 + 3447065-3448204
Length = 379
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 260 IGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISLSREFM 397
+G+ FP +PV +F + A L H+ +P REI L E +
Sbjct: 80 LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGLRWEIV 125
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 635 EIVLFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTF 769
E L+ VL L+G+ G P +YY ++ SR++P TR TF
Sbjct: 280 ESKLYMTVLPDGLYGYVGSKPPQLYYTYLVDTNKSRKDP-TRVTF 323
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 336 EVAAFASNAL*NADTGLLNNGNTYPMVHSTVITRTPQRATSILL 205
E A + N + DT +N+GNT P + T+ + TP + T L+
Sbjct: 961 EDIARSVNVVHVVDTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +1
Query: 568 GPSAHLPGRVPVAEHSPGRGACRDRAVPGRTYNGIVRSLRLDESVRILLLRDVEVRVAPE 747
GP+ L + V A +D V G + G DE +R + + + +APE
Sbjct: 765 GPNILLDDTLSVEVDKNLLNAVKDSIVQGFQW-GAREGPLCDEPIRNVKFKILNANIAPE 823
Query: 748 PVHPQHVPRAPRGRRRTHTAPLGA 819
P+H P RR ++A L A
Sbjct: 824 PLHRGGGQIIPTARRVVYSAFLMA 847
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 413 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 514
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 712 LLRDVEVRVAPE-PVHPQHVPRAPRGRRRTHTAPL 813
L+ DV R AP P P +P +PR +RRT AP+
Sbjct: 114 LVVDVADRPAPATPSPPPLLPPSPRHKRRTAPAPM 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,826,069
Number of Sequences: 37544
Number of extensions: 470322
Number of successful extensions: 1559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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