Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A07
         (594 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3VLP4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.72 
UniRef50_A7HNS6 Cluster: S-layer domain protein; n=1; Fervidobac...    33   3.8  
UniRef50_A7M363 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_A5IN76 Cluster: ABC-2 type transporter precursor; n=2; ...    33   6.7  
UniRef50_Q9G8R8 Cluster: NADH dehydrogenase subunit 11; n=1; Nae...    32   8.8  

>UniRef50_A3VLP4 Cluster: Putative uncharacterized protein; n=1;
           Rhodobacterales bacterium HTCC2654|Rep: Putative
           uncharacterized protein - Rhodobacterales bacterium
           HTCC2654
          Length = 476

 Score = 35.9 bits (79), Expect = 0.72
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = -1

Query: 381 IKLICCFHLLKSMVDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSWMFDMP 202
           + LI     L +  DI  F L +S  +F PAL T + +         P      ++ D P
Sbjct: 79  VGLITSIGFLATGGDIEAFMLAASRALFLPALLTAMAVLQAATKSSAPVMRVAGFVVDQP 138

Query: 201 CIKLAGEKLLAFIGNMFGXL 142
             +  G  +LAF G++FG L
Sbjct: 139 PGRRFG--MLAFAGHLFGIL 156


>UniRef50_A7HNS6 Cluster: S-layer domain protein; n=1;
           Fervidobacterium nodosum Rt17-B1|Rep: S-layer domain
           protein - Fervidobacterium nodosum Rt17-B1
          Length = 441

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 188 ASLMQGMSNIQDMASKAGFGPNMNGAAISTVVDSAGKKMTKLLISENGKISTMD 349
           A + + +SN+QDM ++A  G     A +ST +D   + +       N KIS +D
Sbjct: 313 AKVYEAISNLQDMLARAILGQQEEIANLSTKLDKLNELVVNFSSETNEKISVLD 366


>UniRef50_A7M363 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides ovatus ATCC 8483|Rep: Putative
           uncharacterized protein - Bacteroides ovatus ATCC 8483
          Length = 321

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 324 KTGRYQPWISTSENSKLILFKKN*PIHQEICIIMLKILPTYFMTNESFIILCKFY 488
           + G+Y P++  SENS      +N P+H+    I  K      + N +  I+  FY
Sbjct: 173 RDGKYSPFVMPSENSTSKNSTQNKPLHRPESFISTKTFKEQILPNMNKAIILSFY 227


>UniRef50_A5IN76 Cluster: ABC-2 type transporter precursor; n=2;
           Thermotoga|Rep: ABC-2 type transporter precursor -
           Thermotoga petrophila RKU-1
          Length = 366

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 321 LISSFVIFFPALSTTVEMAA-PFMLGPKPAFEAMSWMFDMPCIKLAGEKLLAF 166
           LIS FV+FF A+  TV +A+    L  +     M  ++++P  K A  K+LA+
Sbjct: 175 LISPFVVFFTAILITVSLASVSTFLDREKNLHEMFLVYNLPAWKYACGKILAY 227


>UniRef50_Q9G8R8 Cluster: NADH dehydrogenase subunit 11; n=1;
           Naegleria gruberi|Rep: NADH dehydrogenase subunit 11 -
           Naegleria gruberi
          Length = 695

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = -2

Query: 533 SSKESNRGPFYVSVSIKFA*YYKTFVSHKIRRKDL*HYYANFLMNWLIFFK*N*FAVFTC 354
           S KES +  FY+  +I F+ YY     +  + +++  Y  +F+ N L+F+  N F +F  
Sbjct: 580 SEKESIKSDFYIFKNILFSFYY-----YLNKNENISFYSVDFIFNELVFYYLNYFFIFFD 634

Query: 353 *NPWL 339
             P+L
Sbjct: 635 IFPYL 639


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,700,605
Number of Sequences: 1657284
Number of extensions: 7675442
Number of successful extensions: 15208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15207
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)