Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A07
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   3.6  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    26   3.6  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   6.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   6.3  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   8.3  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 175 QFFTRKLNARHVKHPGHGFKG 237
           QF  RKL   H KH  HG  G
Sbjct: 213 QFIFRKLGLHHGKHGHHGHSG 233


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 399 IHQEICIIMLKILPTYFMTNESFIILCKFY 488
           +  E+C   L +  T+  +N SFI  CKFY
Sbjct: 148 LSMELCASALHVALTFLKSNGSFI--CKFY 175


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -1

Query: 372 ICCFHLLKSMVDIFPFSLI-SSFV 304
           + CFHL+ + + +FP+++I +SFV
Sbjct: 44  LLCFHLVPNALFLFPWTIITTSFV 67


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 283 R*RREKNDETAN-QRKREDINHGFQQVKTAN*FYLKKISQFIKK 411
           R RRE     AN QR++ D N+  + ++  N  +L+ I ++IKK
Sbjct: 167 RRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKK 210


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -1

Query: 342 VDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSW 217
           V  F F LIS+  I+FP         A   L P  A   + W
Sbjct: 186 VGFFIFWLISNVAIWFPVYQIRHLFTAKSFLAPPAAIAFLIW 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,215
Number of Sequences: 5004
Number of extensions: 34872
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)