Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A01
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.5  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.5  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   9.5  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 422  YVMHFSTITCKY*RLITLVVYCPTQ-NSFLSTFIMFKNKAQCCHCV 288
            Y++ ++   CK     T V  C ++ NS +S F    N  Q CHC+
Sbjct: 1083 YLLQYTIAVCKPTIAPTNVACCCSKCNSTMSPFWWPGNICQACHCL 1128


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 393 TSNSRKVHYIVLTAKRKYIFHSAINKI 473
           TS SR +HY++  AKR+      I KI
Sbjct: 461 TSESRHLHYLMAKAKRENADSKTIRKI 487


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 704 IMLRFSPKRSKVIIFEYESVV*FQNGKAKTNYYEIITK 591
           I+L+ SP+R + +I  +     F+    +T YYE +TK
Sbjct: 505 IVLKLSPERIQELIEIFIRATKFETLFWETPYYEYVTK 542


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 345 VLCRTVNYKCNKPLIFTSNSRKVHYIVLTAKRKYIFHSAI 464
           V+C++ N   N P      S  +HY      R++ FH A+
Sbjct: 535 VMCQSCNEITNTPEPIQDLSIPIHYPSSRVSRRHRFHRAL 574


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 417 NALFYYYL*ILKAYYTCSLLSYTKLFSIY 331
           N ++++ + +L A+YT SLL+     S+Y
Sbjct: 365 NFIWFHIVFVLAAFYTASLLTNWNTTSVY 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,511
Number of Sequences: 5004
Number of extensions: 55217
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)