Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P23
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.7  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 218 NNFESLLHYYSKLFSL 265
           NN++SL HY    F++
Sbjct: 517 NNYQSLAHYLRVFFTV 532


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 34  KSIWFLDMYFLNQSTTSSIVYPPSTYVARLL*SGEL 141
           K+IW  D +F+N+  +   +   S    R+  SG +
Sbjct: 120 KNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSI 155


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 129 LQKPSNVRGRRIYD*R 82
           L+ PS  RGR +YD R
Sbjct: 143 LKYPSFARGRSLYDSR 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,240
Number of Sequences: 336
Number of extensions: 2542
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)