Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P23
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   1.7  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   3.0  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.0  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   3.0  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   7.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   7.0  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   7.0  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   9.2  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 242  YYSKLFSLSHYSNSLKRTDTGRRHPKF*EYKSNS 343
            Y  KL +     + L   DT +RHPKF   + NS
Sbjct: 1282 YVEKLKTSHKLDDILSPRDTSKRHPKFLSSRRNS 1315


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 476 GIRAGNMKYLLVVLLFLYDSCYGRVALQETD 384
           G   G    +  +L  +YD  YGRV  QETD
Sbjct: 345 GTLGGRFTTIEGLLAQVYDELYGRVFSQETD 375


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 239 HYYSKLFSLSHYSNSLKRTDTGRRHPKF*EYKSNSTIDPSHRFFSGTL 382
           H  SK F   H S+S  R+D   RH      K N     +H     TL
Sbjct: 41  HTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQTHPKHDKTL 88


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 414 LRSRCFTRNGYSVPEKNRCEGSIVEFDLYSQNFGCRRPVSVRF 286
           +R   F  +G ++  KNR      E   YS   GC + V   F
Sbjct: 134 IRRSMFPHSGEALKWKNRSRMLANELTYYSPTLGCMQEVDAEF 176


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 314 DAGDPYPSVLVNLNNDLKKITWNSN 240
           D G  +PS+  N  N   K TWN N
Sbjct: 407 DQGSAFPSLAKNPVNPYSKDTWNLN 431


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 266 SHYSNSLKRTDTGRRHPKF*EY-KSNSTIDPSHRFFSGTLYPFLVKQRDRNTNRKGTT 436
           S+ S++ +R  +  R   F  Y KS++ ++PS    S  + P    +RD N    GT+
Sbjct: 290 SYPSSNNQRRPSASRVRSFSNYVKSSNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTS 347


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 341 STIDPSHRFFSGTLY--PFLVKQRDRNTNRKGT 433
           S IDP H F +G  Y   F+++++   T R GT
Sbjct: 779 SIIDPPHEFLTGENYQSAFVIQEKQTET-RTGT 810


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 444 SCFVVPLRFVLRSRCFTRNGYSVPEKNRCEGSI 346
           S    PL  V+++   TR   S+PE  +C+GS+
Sbjct: 219 SSLTTPLD-VVKTLLQTRGSSSIPEVRKCKGSL 250


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 305 DPYPSVLVNLNNDLKKITWNSNGEVI 228
           D YP  + +L    KK+  NSN E++
Sbjct: 131 DNYPEYIQHLPGFTKKVVQNSNPEIL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,682
Number of Sequences: 5004
Number of extensions: 42262
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)