Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P23
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.21 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 247 FQVIFFKSLFKFTKTDGYGSPASKVLRVQVKLDDRSFTSV-LLWDTISVSCK 399
           ++V   KS+    + D  G  A KV  VQV  DD  + S   + D++   C+
Sbjct: 128 WEVNILKSIVGQLQVDTQGENAVKVNSVQVPTDDEPYASFKAMEDSVGGKCE 179


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  SIWFLDMYFLNQSTTSSIVYPPST 108
           SI+FL  Y L  +TT+S    PST
Sbjct: 369 SIYFLGNYSLVPTTTASPTTEPST 392


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
          Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 89 IEEVVDWFKKYM 54
          ++ VVDWF+K M
Sbjct: 53 LQRVVDWFRKNM 64


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 34  KSIWFLDMYFLNQSTTSSIVYPPSTYVARLL*SGEL 141
           K+IW  D +F+N+  +   +   S    R+  SG +
Sbjct: 91  KNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSI 126


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 34  KSIWFLDMYFLNQSTTSSIVYPPSTYVARLL*SGEL 141
           K+IW  D +F+N+  +   +   S    R+  SG +
Sbjct: 91  KNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSI 126


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 34  KSIWFLDMYFLNQSTTSSIVYPPSTYVARLL*SGEL 141
           K+IW  D +F+N+  +   +   S    R+  SG +
Sbjct: 30  KNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSI 65


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 449 LLVVLLFLYDSCYGRVALQE 390
           +L+ ++FL+D C G  ++++
Sbjct: 11  VLLAIVFLFDKCSGYPSIRQ 30


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = -3

Query: 429 PLRFVLRSRCFTRNGYSVPEKNRCEGSIVEFDLYSQ 322
           PL     ++C     YS+P  N  + S +  +   Q
Sbjct: 468 PLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,219
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)