Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P21
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    26   6.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.7  

>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/30 (23%), Positives = 21/30 (70%)
 Frame = +1

Query: 580 QYCKAQNQLRQRKSRVDIKKAIGPTKDSSH 669
           Q+ K++  L+Q+K+++D++   G  +++ +
Sbjct: 17  QFIKSETTLKQKKTKIDVQNVYGLDRNTKN 46


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 548 D*YHNVN*HSRFHELYKFVSF*AIAISKITLTNRYLFCFHKHHYQLYRCYLNQ 390
           D  H VN  + +  +   V F A AIS   +T        +  Y L+R  L Q
Sbjct: 830 DFLHKVNVFAVYWLILAIVQFFAYAISNFAMTYAMEAVLQRIRYHLFRTLLRQ 882


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,330
Number of Sequences: 5004
Number of extensions: 46838
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)