Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_P19
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 367 e-103
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 169 6e-43
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 42 1e-04
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 42 1e-04
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 36 0.006
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 34 0.030
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 28 1.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 2.6
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 4.5
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.0
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 26 6.0
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 7.9
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 7.9
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 367 bits (904), Expect = e-103
Identities = 167/248 (67%), Positives = 194/248 (78%)
Frame = -1
Query: 857 LTHNPEFTTCEFYMAYADYNDLMTITESILXGMVQSIHGSYKVKYHPEGPEGKEIEIDFT 678
LTHNPEFT+ EFY AYADY DLM TE +L G+V+ + GSYKV YHPEGPEG + E+DF+
Sbjct: 333 LTHNPEFTSIEFYQAYADYYDLMDTTEELLSGLVKDLTGSYKVPYHPEGPEGPKWELDFS 392
Query: 677 PPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLLDKLV 498
P+ R+ M+ LE LN K P D+L TPEAN FL +LC H +EC+PP+T +RLLDKLV
Sbjct: 393 RPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDLCAKHGVECAPPQTCSRLLDKLV 452
Query: 497 SVFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQ 318
F+E ECINPTFI+ HPQ+MSPL+KYHR GL ERFE +VA KEICNAYTELND Q
Sbjct: 453 GEFIESECINPTFIIGHPQMMSPLAKYHRSDAGLCERFEAFVATKEICNAYTELNDIFDQ 512
Query: 317 RERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVL 138
R RFEEQA+ +A GDDE DE FCTALEYGLPPTGGWG+GVDRL MFLTDSN I+EVL
Sbjct: 513 RARFEEQARQKAQGDDEAQIIDENFCTALEYGLPPTGGWGMGVDRLVMFLTDSNTIREVL 572
Query: 137 LFPAMKPD 114
LFP MKP+
Sbjct: 573 LFPHMKPE 580
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 169 bits (410), Expect = 6e-43
Identities = 95/252 (37%), Positives = 144/252 (57%), Gaps = 7/252 (2%)
Frame = -1
Query: 854 THNPEFTTCEFYMAYADYNDLMTITESILXGMVQSIHGSYKVKYHPEGPEGKEIEIDFTP 675
THNPEFT+CE Y AY + + +TE ++ + +I+G+ ++ G+ ++++
Sbjct: 289 THNPEFTSCEAYCAYLNLEGMKKLTEELIRFICLTINGNLQIS-------GQTVDLE--K 339
Query: 674 PFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLLDKLV- 498
F + + L++ LNV+L D ++ L ++ +I T A LLDKL
Sbjct: 340 GFEVIEFIPALQKELNVELSPLD--NSENCRKQLISIFKRCEIMLPKTCTVAHLLDKLFD 397
Query: 497 SVFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTE-----RFEVYVAKKEICNAYTELN 333
S+ L+ +P F+++HP++MSPL+K + G E RFE+Y+ EICNAY E N
Sbjct: 398 SLVLKYNTSSPKFVINHPEVMSPLAKSDIKLYGAVEQRISKRFELYIGGYEICNAYEEEN 457
Query: 332 DPATQRERFEEQAKNRAA-GDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSN 156
DP Q +F+ Q +R GDDETP D F ALEYGLPPT GWG+GVDRL M +T +
Sbjct: 458 DPVAQYHKFQAQKYDRLQLGDDETPAPDSDFVHALEYGLPPTAGWGMGVDRLVMLMTGQS 517
Query: 155 NIKEVLLFPAMK 120
I E+L F +++
Sbjct: 518 KISEILPFGSLR 529
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 263 PPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSN-NIKEVLLFP 129
PP + + ++Y P GG+GLG++RL FL N N+KE + FP
Sbjct: 388 PPELQWYLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFP 433
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 41.5 bits (93), Expect = 1e-04
Identities = 33/111 (29%), Positives = 48/111 (43%)
Frame = -1
Query: 461 FILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRA 282
F H + L K V GL +++ V E+ +++P QR ++ K
Sbjct: 471 FTAPHWDDVHLLEKKPLSVRGL--HYDIVVNGIELGGGSIRIHNPDIQRFVLKDVLKL-- 526
Query: 281 AGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 129
+ T E L G PP GG LG DRL LT++ I+EV+ FP
Sbjct: 527 --PENRYATFEHLIRVLSSGCPPHGGIALGFDRLAALLTNAPGIREVIAFP 575
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 36.3 bits (80), Expect = 0.006
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = -1
Query: 404 PGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTALEY 225
P + ++ ++ +EI + ++DP ER + + G + + A
Sbjct: 488 PRYSNSYDFFMKGQEIMSGAQRIHDPELLVERMKALGVSPDVGLQQ-------YIDAFAI 540
Query: 224 GLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 129
G PP G G+G++R+ MF + NI+ FP
Sbjct: 541 GCPPHAGGGIGLERVVMFYLNLPNIRLASSFP 572
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 33.9 bits (74), Expect = 0.030
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 245 FCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 129
F +YG GG GLG++R +L D ++E LFP
Sbjct: 522 FTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFP 560
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 713 GPEGKEIEIDFTPPFARVP---MMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIE 543
G + ++I PF ++P ++ +L VKL D PE ++NNL N+H +E
Sbjct: 390 GNNWRRMDIGIDYPFDQLPDEDIVRFPYAILEVKLQTQFGQDPPE---WVNNLVNSHLVE 446
Query: 542 CSP 534
P
Sbjct: 447 AVP 449
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 395 TERFEVYVAKKEICNAYTELNDPAT 321
+ER E+++ K E CN + NDP++
Sbjct: 217 SEREELFIKKLEQCNIIFDFNDPSS 241
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Frame = -1
Query: 338 LNDPATQRERFEEQAKNRAAGD--------DETPPTDEAFCTALE-YGLPPTGGWGLGVD 186
+ND +RF++ + R GD ++ D+ F + ++ Y TG G +
Sbjct: 435 INDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQLK 494
Query: 185 RLTMFLTDSNNIKEVLLFPAMKPDDPNKNNTEEEN 81
R T+F N+ KE A+K + KN+ + +N
Sbjct: 495 RQTIFTQGPNSTKESK--QAVKEETSVKNSPKGKN 527
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 624 HVKNTFQCCHHR-YSSKGWCEIDFYFLTL-WSFWMIFDLVGSM 746
H T CC ++ K W + FYF L WM D+ G +
Sbjct: 121 HAFTTTWCCMFELFAEKKWMIMSFYFPYLAIPLWMAIDMGGRL 163
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 668 ARVPMMATLERVLNVKLPAPDKLDTPEANDFLN 570
AR P+ L++V KLP PD LDT + +D N
Sbjct: 1369 ARYPIFWGLKKV--GKLPNPDPLDTAQLDDPTN 1399
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 471 YTLLLQKYRNQFIQEPRGGPRWRALNLMS 557
Y+ L++KY FI++P W A + MS
Sbjct: 283 YSALIEKYPIVFIEDPFSEEDWGAFSYMS 311
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 207 AGRRQAIF*SCTKRFIGWGSFIVTSSTILGLLFESFA 317
+G +F C K I W S + TS+T + L S A
Sbjct: 343 SGHAPKVFSKCNKHGIPWLSVLATSATAILCLMSSQA 379
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 209 RSAAGHILELYKTLHRLGEFHRHQQHDSWLA 301
R A+G + L LH G+F + ++ +WLA
Sbjct: 592 RDASGKVTSLKLELHLDGDFKKTEKKVTWLA 622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,816,719
Number of Sequences: 5004
Number of extensions: 85236
Number of successful extensions: 253
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -