Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P18
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570...    29   4.1  

>05_02_0024 -
           5702501-5702664,5703219-5703393,5703716-5704099,
           5705787-5705864,5706015-5706140
          Length = 308

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 306 VAFIKS*ILHTQKHFSTVLTA*KFLAL*TFYRIKILQIINSKKE 437
           VA  +S  LH  +H+ T +   K   L TFYR + LQ I+ KK+
Sbjct: 244 VALFRSEHLHVVQHYDTSILQIKPFDLFTFYR-EELQFISPKKQ 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,643
Number of Sequences: 37544
Number of extensions: 256929
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)