Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P11
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    27   2.6  
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292...    26   6.1  

>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 240 RATKIKYLNILIVCLVRRRVTDHRPAEF 323
           RA  +  L I +V LVR++ T+H P  F
Sbjct: 299 RAASLDKLEIHVVGLVRQKFTNHHPTAF 326


>02_04_0290 -
           21627733-21628353,21628424-21628663,21628874-21629214,
           21630934-21631612,21631893-21631962,21632063-21632190
          Length = 692

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 118 MQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRK 234
           ++S+ S PG       P    Q L GT  S  E W   K
Sbjct: 549 LRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAK 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,278,278
Number of Sequences: 37544
Number of extensions: 63004
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)