Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_P10
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 27 2.4
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 27 2.4
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 26 3.1
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 4.1
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 25 5.5
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding... 25 5.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 5.5
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 5.5
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 7.2
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 7.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 9.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.5
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 57 MDKPSESVVIFFSLNIGAFSHRELPQLLQECRGS 158
+DKP ESV F S+ GAFS L + +G+
Sbjct: 400 LDKPVESVFGFISVLPGAFSAYRFEALQNDSQGN 433
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 451 TFQRVFSQCCSVHDWILLFYCYSHHSFHSI 540
T V SQ S H +FY Y+ H H +
Sbjct: 222 TLTTVVSQLPSTHIMTKIFYVYASHELHQV 251
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 520 ENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQDLVKQH 398
+ +S+ +S H N KIL E RK+LE + D H
Sbjct: 11 KKASQFQRSLHSDPNQAKILLEERRKLLEEANSSADENDSH 51
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 4.1
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 220 DTFKRFFKCLDCKNRTVSLELLPLHSCN-NCGSSRWEKAPMLREKKITTLSDGLSIQG*R 44
+T RF K N SL + + N NC S W K P +++ K+ L + R
Sbjct: 258 ETLNRFGKAY--VNNEESLFTSSVVNINMNCDISIWSKIPPIQDGKVLVLFGENEVF--R 313
Query: 43 RNIFGWTS 20
I WTS
Sbjct: 314 DEILSWTS 321
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 175 TVSLELLPLHSCNNCGSSRWEKAPMLREKKITTLSDGLSIQG 50
T+ +E+ PLH N G + ++K+ L DG IQG
Sbjct: 41 TLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQG 82
>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 532 GMNDENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQD 413
G N+ + S + + +Q K+ ++IL A+ VH D
Sbjct: 28 GFNEYDQSSQPSVDRQQGAGNKLRPVTIKQILNASQVHAD 67
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 108 AFSHRELPQLLQECRGSNSKETVLFLQSKHLKNLLN 215
A+ + LP + E + N T+L L++ + +LLN
Sbjct: 853 AYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLN 888
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 18 QLVHPKMFLLHPCMDKPSESVVIFFSLNIGAFSHRELPQLLQECRGSNSKETVLFLQSKH 197
+++ P + L D E V+ + + AFS R+LP R S E + ++SK
Sbjct: 373 EMIDPDITLAMESCDASKEQPVLVYISKMVAFSERDLP---NHRRKQLSAEEMKLIRSKL 429
Query: 198 LKNLLNVSNT 227
+++ + NT
Sbjct: 430 SESIESGINT 439
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 523 DENSSKKAKSNHEQSNTGKILSERFRKILE 434
+EN NH+ +N G I+ + +K+L+
Sbjct: 463 EENDISSRSGNHKHANVGLIIPKMKQKVLK 492
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 529 MNDENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQ 383
+++E+ + K E + KIL ER + L Q +DDEQ
Sbjct: 538 LSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQ 586
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +3
Query: 18 QLVHPKMFLLHPCMDKPSESVVIFFSLNIG 107
Q + K+ L CM+ S+ + + + +N+G
Sbjct: 750 QEIKNKLIKLIECMESKSDQIYLLYDVNVG 779
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 523 DENSSKKAKSNHEQSNTGKILSERFRKI 440
D + ++ S+HE SN G L FR I
Sbjct: 53 DRDETESLMSSHEASNAGISLDSSFRVI 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,391
Number of Sequences: 5004
Number of extensions: 33081
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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