Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P10
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309...    29   2.4  
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305...    29   2.4  
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301...    29   2.4  
10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127     27   7.3  
01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052     27   7.3  
11_04_0118 + 13624086-13625120                                         27   9.7  
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158...    27   9.7  
05_02_0094 + 6562212-6563399                                           27   9.7  

>07_01_0404 +
           3093851-3094051,3094622-3094948,3096685-3096798,
           3096897-3097109,3097975-3098151,3098270-3100091,
           3100107-3100927,3101070-3101390
          Length = 1331

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 193 LDCKNRTVSLELL-PLHSCNNCGSSRWEKAPMLREKKITTLSDGLSIQG*RRN 38
           +  KN   +L+L   L   NN GSS W +   L   ++ + S+ L  QG R N
Sbjct: 810 MSTKNEMSNLDLTYGLQMGNNIGSSAWSQGMQLPSTQLQSSSNSLLDQGARLN 862


>07_01_0400 +
           3048607-3048807,3049378-3049704,3051441-3051554,
           3051653-3051865,3052731-3052907,3053026-3054847,
           3054863-3055683,3055826-3056146
          Length = 1331

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 193 LDCKNRTVSLELL-PLHSCNNCGSSRWEKAPMLREKKITTLSDGLSIQG*RRN 38
           +  KN   +L+L   L   NN GSS W +   L   ++ + S+ L  QG R N
Sbjct: 810 MSTKNEMSNLDLTYGLQMGNNIGSSAWSQGMQLPSTQLQSSSNSLLDQGARLN 862


>07_01_0396 +
           3016900-3017175,3017926-3018039,3018138-3018350,
           3019216-3019392,3019511-3021332,3021348-3022168,
           3022311-3022631
          Length = 1247

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 193 LDCKNRTVSLELL-PLHSCNNCGSSRWEKAPMLREKKITTLSDGLSIQG*RRN 38
           +  KN   +L+L   L   NN GSS W +   L   ++ + S+ L  QG R N
Sbjct: 726 MSTKNEMSNLDLTYGLQMGNNIGSSAWSQGMQLPSTQLQSSSNSLLDQGARLN 778


>10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127
          Length = 485

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 51  PCMDKPSESVVIFFS---LNIGAFSHRELPQLLQECRGSNSK 167
           PC+DK S S+++FFS   + +  F+   LP  +       SK
Sbjct: 327 PCLDKVSYSLLVFFSGMFVTVSGFNKTGLPGAIWNVMAPYSK 368


>01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052
          Length = 492

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 211 KRFFKCLDCKNRTVS-LELLPLHSCNNCGSSRWEKAPMLREKKITT 77
           K FF CL     +   L L    S    G+SR+   PMLR KK+ T
Sbjct: 301 KSFFYCLPATPASSGFLTLGAPASGGGGGASRFATTPMLRSKKVPT 346


>11_04_0118 + 13624086-13625120
          Length = 344

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 316 LPCKAVRCAKCK-YTAFSAAQRCKDERHPLKVL 221
           LPC AV+C+ CK  T F +A   K   H L  L
Sbjct: 13  LPCLAVQCSCCKPNTTFISAAEKKPVAHGLPEL 45


>06_01_0207 +
           1579343-1579529,1579610-1579659,1579896-1580092,
           1580343-1580469,1580562-1580693
          Length = 230

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 529 MNDENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQEK 377
           + DEN+S     N  +   GK +  RF+++ EA +V +   ++   DE++K
Sbjct: 104 VGDENAS--VDENRRKRKRGKAVDLRFKELDEAVAVSKKQKRKKYLDEKKK 152


>05_02_0094 + 6562212-6563399
          Length = 395

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -2

Query: 220 DTFKRFFKCLDCKNRTVSLE--LLPLHSCNNCGSSRWEKA--PMLR---EKKITTLSDGL 62
           D  ++F   ++ +    SLE  L  L S N   SS WEKA   +L    E+KI  L D L
Sbjct: 333 DGVRKFVAWIEREGDAASLESVLCQLASVNALESSEWEKAMSGVLHDPAEQKIVKLLDNL 392

Query: 61  SI 56
           S+
Sbjct: 393 SL 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,614,942
Number of Sequences: 37544
Number of extensions: 188256
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)