Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_P10
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    82   3e-16
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    31   0.41 
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    31   0.41 
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    31   0.71 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    29   1.6  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z92825-8|CAB07316.2|  469|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z75955-18|CAB00126.2|  469|Caenorhabditis elegans Hypothetical p...    28   5.0  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
 Frame = -2

Query: 457 ERFRKILEATSVHQDLVKQHEDDEQEKYFNXXXXXXXXXXXXLSTYKLP-CKAVRCAKCK 281
           +  R +L   S H    ++ E D  +++               +  ++   K V C +CK
Sbjct: 547 DEIRAMLARKSTHHKEAEKAEHDMLQRHLTGMEEREKVETFTTTCVEVKNVKVVTCNQCK 606

Query: 280 YTAFSAAQRCKDERHPLKVLDTFKRFFKCLDCKNRTVSLELLPLHSCNNCGSSRWEKAPM 101
           YT+  A+  C  + H L      KRFFKC  CK RTV  E++P+  C +C  ++WE+  M
Sbjct: 607 YTSQFASSECIKKEHKLIKHTADKRFFKCTGCKKRTVCFEMMPVKHCAHCNENKWERVAM 666

Query: 100 LREKKITTLSDGLSIQG*RRNIFG 29
             E+K+   ++ L ++G  R   G
Sbjct: 667 KDERKVVLDTENLLLRGEERPFVG 690


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 502 AKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQEK 377
           AK  HE+    K+L    R++LE   + Q+L +  E  E+ +
Sbjct: 70  AKKRHEEEEAAKLLDYEQRRVLEKEQIEQELRELKEKQEKRR 111


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 502 AKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQEK 377
           AK  HE+    K+L    R++LE   + Q+L +  E  E+ +
Sbjct: 70  AKKRHEEEEAAKLLDYEQRRVLEKEQIEQELRELKEKQEKRR 111


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 502 AKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQEK 377
           AK  HE+    K+L    R++LE   + Q+L +  E  E+ +
Sbjct: 79  AKKRHEEEEAAKLLDYEQRRVLEKEQMEQELRELKEKQEKRR 120


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 502 AKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQEK 377
           A +  E+ N G  L  R R ++++   +QD++  H D  + K
Sbjct: 377 APNEEEELNYGGFLESRIRLLVQSLERNQDIIIAHNDPNKHK 418


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 205 FFKCLD---CKNRTVSLELLPLHSCNNCGSSR 119
           F  CLD   C NR++ +E  P+HS  +  SSR
Sbjct: 480 FLPCLDENECFNRSLEIEKPPMHSTPDLSSSR 511


>Z92825-8|CAB07316.2|  469|Caenorhabditis elegans Hypothetical
           protein C13C4.2 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 144 ECRGSNSKETVLFLQSKHLKNLLNVSNTFRGCLSSL 251
           E +  N K+  +++++KH +    +  TFR C+S +
Sbjct: 427 ENQSKNQKDFHVYIKAKHFQKHKKMGTTFRKCISCM 462


>Z75955-18|CAB00126.2|  469|Caenorhabditis elegans Hypothetical
           protein C13C4.2 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 144 ECRGSNSKETVLFLQSKHLKNLLNVSNTFRGCLSSL 251
           E +  N K+  +++++KH +    +  TFR C+S +
Sbjct: 427 ENQSKNQKDFHVYIKAKHFQKHKKMGTTFRKCISCM 462


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 529 MNDENSSKKAKSNHEQSNTGKILSE-RFRKILEATSVHQDLVKQHEDDEQE 380
           M +E   KKAK  +E++   +I  + R +K  E     ++LVKQ ++ E++
Sbjct: 337 MEEEAQEKKAKGEYEKAEEKRIREQNRLQKATERNQA-KELVKQAKELERD 386


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical protein
            C34E11.3 protein.
          Length = 1577

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -2

Query: 541  KLNGMNDENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQ 383
            +LN    E +++K +  +E   T ++LSE+  K+LE   + Q  + Q++D +Q
Sbjct: 1124 RLNDKITEITAEKNRQKNEAQKTIRVLSEQI-KVLE---IEQKNLSQNKDSQQ 1172


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
            protein C34E11.3 protein.
          Length = 1577

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -2

Query: 541  KLNGMNDENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQ 383
            +LN    E +++K +  +E   T ++LSE+  K+LE   + Q  + Q++D +Q
Sbjct: 1124 RLNDKITEITAEKNRQKNEAQKTIRVLSEQI-KVLE---IEQKNLSQNKDSQQ 1172


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical protein
            C34E11.3 protein.
          Length = 1577

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -2

Query: 541  KLNGMNDENSSKKAKSNHEQSNTGKILSERFRKILEATSVHQDLVKQHEDDEQ 383
            +LN    E +++K +  +E   T ++LSE+  K+LE   + Q  + Q++D +Q
Sbjct: 1124 RLNDKITEITAEKNRQKNEAQKTIRVLSEQI-KVLE---IEQKNLSQNKDSQQ 1172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,719
Number of Sequences: 27780
Number of extensions: 188549
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)