Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O23
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   2.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   3.0  

>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 550 KYNSIKANEYKTITTAFXNFNYSIDLFILICHFRQNKLKS 669
           K  SI    Y+T+ T   N+   ID+ +LIC    ++LKS
Sbjct: 311 KTYSIIITGYETVCTYLRNYGCGIDIDLLICD-EAHRLKS 349


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 580 CIRSPLCYYILFKRTXLST*LMFLILRNR 494
           CIR+P C YILF+       L +++ R +
Sbjct: 118 CIRTPACTYILFEYVPGGQLLEYILARGK 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,142
Number of Sequences: 5004
Number of extensions: 53667
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)