Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O22
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    54   6e-09
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    47   1e-06
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.9  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   5.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    24   7.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
 Frame = -3

Query: 207 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCXK 88
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RC K
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSK 41



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = -1

Query: 167 RRGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPPGLQVKE 3
           RR   T  R K + T +    +    ++LYTLV+ D +KAEKL+QSLPP L V E
Sbjct: 16  RRKDATSARIK-KNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTE 69


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 25/54 (46%), Positives = 32/54 (59%)
 Frame = -1

Query: 164 RGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPPGLQVKE 3
           RG  T  R K +   +    +    R+LYTLV+ D +KAEKL+QSLPP L V E
Sbjct: 17  RGDATSARVK-KNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTE 69



 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -3

Query: 207 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCXK 88
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RC +
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSR 41


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 224 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 99
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 124 VLLYFDRFGVFPPRLN*KVFDIFD 195
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 213 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXKVPVH 76
           FN+ R  +DI +F +++R + A     +KN E +   V+  ++P++
Sbjct: 252 FNLERICQDIGNFDVRSRIERAARQAREKN-EKLLQNVKTSEIPIN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,698
Number of Sequences: 5004
Number of extensions: 28777
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)