Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_O18
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 195 6e-51
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 3e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 109 3e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 52 7e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 5e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 0.001
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 31 0.23
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.95
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.8
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 195 bits (475), Expect = 6e-51
Identities = 93/109 (85%), Positives = 98/109 (89%)
Frame = -1
Query: 755 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 576
+F+TTAEREIVRDIKEKL YVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR P
Sbjct: 199 TFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAP 258
Query: 575 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMXP 429
EALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTM P
Sbjct: 259 EALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
Score = 136 bits (330), Expect = 2e-33
Identities = 62/68 (91%), Positives = 66/68 (97%)
Frame = -2
Query: 427 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 248
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 247 SIVHRKCF 224
IV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (263), Expect = 3e-25
Identities = 50/104 (48%), Positives = 69/104 (66%)
Frame = -1
Query: 746 TTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAL 567
++AE+EIVR+IKEK YVA DF E+ + +Y+LPD Q IT+G E F PE L
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVL 266
Query: 566 FQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 435
F P +G EA+G+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTL 310
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -2
Query: 427 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 248
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 247 SIVHRKCF 224
+++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 109 bits (263), Expect = 3e-25
Identities = 51/107 (47%), Positives = 73/107 (68%)
Frame = -1
Query: 755 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 576
+F TA+ E VR++KEKL YV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CP
Sbjct: 199 AFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECP 258
Query: 575 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 435
E LFQP +G E G+ E +++I DVDIRK LY VLSGG++M
Sbjct: 259 ECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSM 305
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -2
Query: 373 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 251
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.5 bits (160), Expect = 1e-12
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Frame = -1
Query: 755 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 576
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 575 EALFQPSFLGMEAN---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMXP 429
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ P
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIP 357
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -2
Query: 427 GIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDES 254
G+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417
Query: 253 G 251
G
Sbjct: 418 G 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Frame = -2
Query: 427 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 257
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 256 SGP---SIVHRKC 227
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 35.5 bits (78), Expect(2) = 7e-07
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 533 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 435
GI + N I +CDVDIR L N ++ GGT++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSL 358
Score = 33.1 bits (72), Expect(2) = 7e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 662 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 558
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.4 bits (120), Expect = 7e-08
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Frame = -1
Query: 737 EREIVRDIKEKLXYVALDFEQEMATAASS--SSLEKSYELPD------------------ 618
E IV +IKE + YV+ +F+++M S LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 617 GQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 438
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNC 330
Query: 437 MXP 429
P
Sbjct: 331 KFP 333
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.6 bits (113), Expect = 5e-07
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = -1
Query: 716 IKEKLXYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 549
IKE+ YV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 548 GME-ANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 435
+ + E N + +D+RK LY N VLSGG+T+
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTL 338
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 370 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 233
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = -1
Query: 593 ERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMXP 429
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG P
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLP 648
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -2
Query: 427 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 248
G+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 649 GMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
Query: 247 SIV 239
+
Sbjct: 709 EYI 711
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -1
Query: 737 EREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 558
E +I + K ++ D Q+ T+ SSL SYE + + ++ P + F+P
Sbjct: 81 ELDIAKSDSYKYTFIIKDCHQDWETSDEKSSL--SYEYDFTPIYSKEDQVVSIPFSEFKP 138
Query: 557 SFLGMEANGIHETTYNSIMKCDVDIR 480
++ G G E + I + + IR
Sbjct: 139 TYRGRPVEGAPELDVSKITQFSIMIR 164
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 427 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 257
G A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 544 GFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKM 603
Query: 256 SGPSIVHRK 230
G ++ K
Sbjct: 604 LGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 331 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 230
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPTASTKPHTTPS 503
PP+ +PS SL P S + + S R ++ S + KP+ P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -2
Query: 667 PPLHPAA-PSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPTASTKPH 515
PP HPA+ SR + ++ TV+SSPS T ++L + P + T S+ P+
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT---TYRQLPNEPQNSAAYTTYSSFPN 122
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 496 AT 491
T
Sbjct: 1636 PT 1637
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 496 AT 491
T
Sbjct: 1657 PT 1658
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 496 AT 491
T
Sbjct: 1650 PT 1651
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 496 AT 491
T
Sbjct: 1671 PT 1672
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 496 AT 491
T
Sbjct: 1678 PT 1679
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 496 AT 491
T
Sbjct: 1685 PT 1686
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 496 AT 491
T
Sbjct: 1692 PT 1693
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 496 AT 491
T
Sbjct: 1699 PT 1700
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 496 AT 491
T
Sbjct: 1706 PT 1707
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 496 AT 491
T
Sbjct: 1713 PT 1714
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1660 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 496 AT 491
T
Sbjct: 1720 PT 1721
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 496 AT 491
T
Sbjct: 1727 PT 1728
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1733
Query: 496 AT 491
T
Sbjct: 1734 PT 1735
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 496 AT 491
T
Sbjct: 1741 PT 1742
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 667 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 497
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747
Query: 496 AT 491
T
Sbjct: 1748 PT 1749
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 406 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 296
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 658 HPAAPSRSLTNFPTVRSSPSETKDSV 581
HPA+ SLTN ++ + P+ D +
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMI 156
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 716 IKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQV 609
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,626
Number of Sequences: 5004
Number of extensions: 65808
Number of successful extensions: 283
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -