Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O18
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             168   4e-44
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  168 bits (409), Expect = 4e-44
 Identities = 80/82 (97%), Positives = 80/82 (97%)
 Frame = -1

Query: 674 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKC 495
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA GIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 494 DVDIRKDLYANTVLSGGTTMXP 429
           DVDIRKDLYANTVLSGGTTM P
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYP 82



 Score =  106 bits (254), Expect = 3e-25
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = -2

Query: 427 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 275
           GIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 83  GIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 29  TLINKNLCQKKNGNNNIPFVLRNMHITIP 115
           T I K L   KNGN +   +++ + IT+P
Sbjct: 70  TCIMKLLRTFKNGNFDFDMIVKQLEITMP 98


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 473 LYANTVLSGGTTMXPWNRRPYAKGNHSSRPIDNE 372
           L +N +L     +  W R  Y + NH S  +D E
Sbjct: 46  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDLE 79


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 473 LYANTVLSGGTTMXPWNRRPYAKGNHSSRPIDNE 372
           L +N +L     +  W R  Y + NH S  +D E
Sbjct: 84  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDLE 117


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 655 DAAVAISCSKSRATXHSFSLISRTISRS 738
           D+  + +CS S++   S S ISR  +RS
Sbjct: 14  DSGYSNTCSNSQSQRSSGSSISRNSNRS 41


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 655 DAAVAISCSKSRATXHSFSLISRTISRS 738
           D+  + +CS S++   S S ISR  +RS
Sbjct: 14  DSGYSNTCSNSQSQRSSGSSISRNSNRS 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,419
Number of Sequences: 438
Number of extensions: 5071
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)