Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_O17
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 33 1.1
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 33 1.1
AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form ... 30 7.6
AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form ... 30 7.6
AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form ... 30 7.6
AK074439-1|BAB85084.1| 146|Homo sapiens protein ( Homo sapiens ... 30 7.6
AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein. 30 7.6
AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein. 30 7.6
AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein. 30 7.6
AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein. 30 7.6
AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein. 30 7.6
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 32.7 bits (71), Expect = 1.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 250 TAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRTHP 101
++P TP TYT + Y PS ++ PT+P P P Y + EY T P
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 32.7 bits (71), Expect = 1.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 250 TAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRTHP 101
++P TP TYT + Y PS ++ PT+P P P Y + EY T P
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
>AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 3 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 2 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 1 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AK074439-1|BAB85084.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ23859 fis, clone LNG08092. ).
Length = 146
Score = 29.9 bits (64), Expect = 7.6
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Frame = -2
Query: 349 YQTSNGISGQEQGVLVNEG------REDASIAVQGSSGYTAPDGTPIQITYTADANGYQP 188
YQTS I Q Q G ++ A + PD Q TYT YQP
Sbjct: 12 YQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDYSQQGRFVPPDMMQPQQTYTGQI--YQP 69
Query: 187 SGAHLPTTPAP 155
+ A+ PTTP P
Sbjct: 70 TQAYPPTTPQP 80
>AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 410 DICRHFTNLCLNGRCLPTPSSYRCECN 436
>AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein.
Length = 2816
Score = 29.9 bits (64), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 470 DVSSHFECVCVNGRCVTVSSAGRIHLN 550
D+ HF +C+NGRC+ S+ R N
Sbjct: 417 DICRHFTNLCLNGRCLPTPSSYRCECN 443
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,269,902
Number of Sequences: 237096
Number of extensions: 2004567
Number of successful extensions: 9167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9159
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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