Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O17
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    95   6e-22
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 94.7 bits (225), Expect = 6e-22
 Identities = 51/112 (45%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
 Frame = -2

Query: 412 EADAQIVSQDADV-FPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 236
           + DA I SQ  +V F   Y   ++TSNGIS QE G       E   ++ QGS  YTAPDG
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDG 82

Query: 235 TPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPEVGQ 80
             + ITY AD NG+Q  G+H+PT P   PIP  I RA+E+   HP + + GQ
Sbjct: 83  QQVSITYVADENGFQVQGSHIPTAP---PIPPEIQRALEWNAAHPEEDDGGQ 131


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  YGLRCFNNSRPYQLSYNLNTLADL 91
           Y    +NN+   QL YN+N +  +
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIEQI 112


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  YGLRCFNNSRPYQLSYNLNTLADL 91
           Y    +NN+   QL YN+N +  +
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIEQI 112


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  YGLRCFNNSRPYQLSYNLNTLADL 91
           Y    +NN+   QL YN+N +  +
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIEQI 112


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  YGLRCFNNSRPYQLSYNLNTLADL 91
           Y    +NN+   QL YN+N +  +
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIEQI 112


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  YGLRCFNNSRPYQLSYNLNTLADL 91
           Y    +NN+   QL YN+N +  +
Sbjct: 89  YNYSNYNNNNYKQLCYNINHIEQI 112


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  YGLRCFNNSRPYQLSYNLNTLADL 91
           Y    +NN+   QL YN+N +  +
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIEQI 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,968
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)