Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_O15
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984... 255 3e-68
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 204 8e-53
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 111 4e-25
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 65 7e-11
07_03_1728 + 29076733-29079069 29 5.4
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 29 5.4
01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589 28 9.5
>03_05_0911 +
28697654-28697698,28698170-28698278,28698352-28698433,
28698486-28698514,28699472-28699567,28699860-28699963,
28700071-28700201,28700276-28700369,28701666-28701721,
28702728-28702821
Length = 279
Score = 255 bits (624), Expect = 3e-68
Identities = 129/269 (47%), Positives = 184/269 (68%), Gaps = 15/269 (5%)
Frame = -1
Query: 774 TXCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQFGPNGGL 595
T CS++ +H R + +VNLDPAAEHF Y DIRELI LDD ME EL GPNGGL
Sbjct: 17 TYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVME--ELGMGPNGGL 74
Query: 594 VFCIETL------------LENS--DWLEEQL-GDVDDDYILFDCPGQIELYTHLPVMRR 460
++C+E L LE++ DWL+EQL G +DDDY++FDCPGQIEL+TH+PV+R
Sbjct: 75 IYCMELLKLLTDPSENHRHLEDNLDDWLDEQLEGYLDDDYLVFDCPGQIELFTHVPVLRN 134
Query: 459 LVDLLQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLSKT 280
V+ L+ NF +C V+L+DSQF+ D K++SG MA+LS M+ LELPH+N+L+KMDL+S
Sbjct: 135 FVEHLKRKNFNVCAVYLLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVSN- 193
Query: 279 ARKQIDNYLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRXXPLNIRDEES 100
+K ++ YL+P+ VLLS + + + + KL +++ E+V+++S+V PL++R E S
Sbjct: 194 -KKDVEEYLNPEAQVLLSQL---NRQMAPNFGKLNKSLAELVDDYSMVNFIPLDLRKESS 249
Query: 99 XEKMMLTGDKMRQDGEDADVKIKDFDEVE 13
+ ++ D Q GEDADVK++DFD E
Sbjct: 250 IQYVLSHIDNCIQYGEDADVKVRDFDPEE 278
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 204 bits (497), Expect = 8e-53
Identities = 106/252 (42%), Positives = 160/252 (63%), Gaps = 1/252 (0%)
Frame = -1
Query: 774 TXCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQFGPNGGL 595
T CS++ +H R + +VNLDPAAEHF Y V HL+D ++D
Sbjct: 17 TYCSSLYQHCETVGRTIHMVNLDPAAEHFSYP--VSTENHRHLEDNLDD----------- 63
Query: 594 VFCIETLLENSDWLEEQL-GDVDDDYILFDCPGQIELYTHLPVMRRLVDLLQNWNFRICV 418
WL+EQL G +DDDY++FDCPGQIEL+TH+PV+R V+ L+ NF +C
Sbjct: 64 ------------WLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLRNFVEHLKRKNFNVCA 111
Query: 417 VFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLSKTARKQIDNYLDPDPH 238
V+ +DSQF+ D K++SG MA+LS M+ LELPH+N+L+KMDL++ +K ++ YL+P+
Sbjct: 112 VYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVAN--KKDVEEYLNPEAQ 169
Query: 237 VLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRXXPLNIRDEESXEKMMLTGDKMRQD 58
VLLS + + + K+ KL +++ E+V+++S+V PL++R E S + ++ D Q
Sbjct: 170 VLLSQL---NRQMAPKFGKLNKSLAELVDDYSMVNFIPLDLRKESSIQYVLSHIDNCIQY 226
Query: 57 GEDADVKIKDFD 22
G DADVK++DFD
Sbjct: 227 GVDADVKVRDFD 238
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 111 bits (268), Expect = 4e-25
Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Frame = -1
Query: 600 GLVFCIETLLENSDWLEEQLGD-VDDDYILFDCPGQIELY-THLPVMRRLVDLLQNWNFR 427
GLV+C++ L +N DWLEE+L ++D Y+LFD PGQ+EL+ H + L++ N R
Sbjct: 24 GLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSIIYKLIKKLNLR 83
Query: 426 ICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLSKTARK--QIDNYL 253
+ V L+D+ D K++S + +LS M+++ELPH+NVL+K+DL+ ++ Y
Sbjct: 84 LTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIENYGNLAFNLNFYT 143
Query: 252 DPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRXXPLNIRDEESXEKMML 82
D + L + + KY KLT+ + +V+++F LV L+I+ S + L
Sbjct: 144 DVEDLSYLQRHLDQDPR-SAKYRKLTKELCDVIDDFGLVNFTTLDIQTAVSLSSVKL 199
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 64.9 bits (151), Expect = 7e-11
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Frame = -1
Query: 774 TXCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQFGPNGGL 595
T +V H S V+NLDPA + +DIR+ + + M++ L GPNGG+
Sbjct: 83 TFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGL--GPNGGI 140
Query: 594 VFCIETLLENSDWLEEQLGDVDD--DYILFDCPGQIELYTHLPVMRRLVDLLQNWNFRIC 421
+ + D + + D DY+L D PGQIE++T + + + F
Sbjct: 141 LTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTV 199
Query: 420 VVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDL 292
V ++VD+ F+S + A S++ LP + K+D+
Sbjct: 200 VAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDV 242
>07_03_1728 + 29076733-29079069
Length = 778
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 258 YLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIG 163
+++P P + D + H +WHE + L+E G
Sbjct: 47 FVEPPPPLGHGDGEDDHCRWHESFLPLSELAG 78
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -1
Query: 279 ARKQIDNYLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRXXPLNI 115
AR+ Y DP V + EKYA+L E+IGE+ N V NI
Sbjct: 49 ARRAAGPYTGRDPEVKKPAWLRQRAAQGEKYARLRESIGELKLNTVCVEAQCPNI 103
>01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589
Length = 344
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 546 QLGDVDDDYILFDCPGQIELYTHLP 472
QLGDVDD+ + D G ++L H+P
Sbjct: 137 QLGDVDDNGVNGDDGGGLDLQQHVP 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,427,049
Number of Sequences: 37544
Number of extensions: 382096
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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