Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_O07
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161... 38 0.009
01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941... 35 0.066
12_02_0769 + 23001558-23001995 32 0.46
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 31 1.4
07_03_0775 - 21413522-21413797,21414016-21414178,21414274-214143... 29 4.3
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 4.3
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316... 28 7.5
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 28 7.5
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 9.9
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 9.9
>05_07_0167 +
28115290-28115349,28115952-28115996,28116087-28116179,
28116259-28116342,28116949-28117131,28117234-28117276,
28117671-28117891,28118060-28118137,28118404-28118529,
28118616-28118825
Length = 380
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -2
Query: 680 KRRNRNNEAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 522
KR+ N E+ ++SR + + T++ ++V L AEN L ++ LS+ + L+
Sbjct: 252 KRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSESSEKLR 304
>01_06_0133 -
26793335-26793380,26793696-26793907,26794009-26794134,
26794258-26794335,26794857-26795014,26795230-26795278,
26795369-26795414,26795527-26795654,26796154-26796237,
26796317-26796409,26796505-26796549,26796792-26796851
Length = 374
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -2
Query: 680 KRRNRNNEAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 522
+R+ N E+ ++SR + + T+E +V L AEN L ++ L++ + L+
Sbjct: 230 RRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLR 282
>12_02_0769 + 23001558-23001995
Length = 145
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 680 KRRNRNNEAVKKSRFKSKQRTQETFSRVSKLKAEN 576
KRR N E+ ++SR + +Q E V++L+A+N
Sbjct: 29 KRRLSNRESARRSRLRKQQHLDELVQEVARLQADN 63
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -2
Query: 653 VKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEG 474
VK K F R+ +EN+ L ++ QF+ + F+ KD + ++
Sbjct: 710 VKSEVCKEAGYASSLFQRLMHSSSENKRLTKQYMMDPSISQFVSENFYEGRLKDDSTVKS 769
Query: 473 IDLNKLFEDLP 441
D NKL ++ P
Sbjct: 770 DDYNKLLKEFP 780
>07_03_0775 -
21413522-21413797,21414016-21414178,21414274-21414351,
21415983-21416176
Length = 236
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = -2
Query: 680 KRRNRNNEAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFL 525
++ +NE++++ + K E KLKAE + LE+++K L+ + F+
Sbjct: 128 QKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIKFLNARPSFV 179
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 614 ETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 519
E S KLK N+ L+EK+K L + L+D
Sbjct: 122 ELRSEAQKLKESNESLQEKIKELKAEKNELRD 153
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 425 LCPYRLVSLQRACLSRYLPIRWCLSLLEQKTSLSGTEVVLIKFLLSPRAL 574
LC +L S+ +CL L + + S + + G VL++ +LS +A+
Sbjct: 444 LCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAI 493
>08_01_0361 +
3165516-3165564,3166316-3166386,3166481-3166562,
3166677-3166792,3166892-3167053,3167158-3167202,
3168097-3168174,3168632-3168742
Length = 237
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -2
Query: 650 KKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 522
+ S +K+R E S +SKL EN+V ++ + L +L+ L+
Sbjct: 163 RSSAEPTKERPTEPSSMISKLNEENRVAIQQNQKLRHELELLR 205
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -2
Query: 674 RNRNNEAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 519
R RN++A S + Q ++ S+V+KLKAE L E+ + L+++ L+D
Sbjct: 7 RPRNDKATILS--DAIQMLKDLTSQVNKLKAEYTSLSEEARELTQEKNELRD 56
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -2
Query: 668 RNNEAVKKSRFKSKQRTQETFSRVSKLKAENQV-LEEKVKTLSKQLQFLKDLFFAQAKKD 492
+ EAV+++ + K+ QET ++K+++ + ++ + L++ ++F++ + QAK D
Sbjct: 1540 KRREAVEETFARQKEEIQETKRELNKIRSRHMTEIKAHEEKLAESIRFIQKI---QAKYD 1596
Query: 491 TT 486
T
Sbjct: 1597 KT 1598
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = -2
Query: 668 RNNEAVKKSRFKSKQRTQ--ETFSRV----SKLKAENQVLEEK 558
RN++ +KK SK TQ ET R+ + L+AENQVL ++
Sbjct: 1819 RNDDLIKKIEESSKTITQLQETLQRLEGKSTNLEAENQVLRQQ 1861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,789
Number of Sequences: 37544
Number of extensions: 224368
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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