Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O06
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    29   0.38 
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   2.7  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   4.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   4.7  

>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 181 NIFT*RTLIXQEGMESFXKDDDILFMEWG 95
           +IF    LI Q   +SF +D+++  M+WG
Sbjct: 555 SIFANEILIEQADAQSFKQDEEVTLMDWG 583


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +2

Query: 161 CSLSKDIMFSFFTTHRSFFEYLVQPPKHYFLKTFMVILLELTLSMDRILSRASSKIAGV* 340
           C  S    FS  T  ++FF+  +  P    L   M   + +   +  ILS   +KI    
Sbjct: 40  CLNSSRSGFSMVTLKKAFFDKYIFQPDSVLLTGLMTPTIRIRTQVKPILSVFRNKI---- 95

Query: 341 FDFTPYLRT 367
           FDF P + T
Sbjct: 96  FDFIPTVVT 104


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -1

Query: 360 KYGVKSNYTPAILEEALDKIRSIERVSSNNITI 262
           K+G K+  + +ILE+A DK+++ +R++  N+ +
Sbjct: 601 KFG-KAKRSISILEKAADKVKTADRLAIYNVLL 632


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 434 SATHTFFLLITVNRKGAKVLKTYSQLIGRP 523
           S + T  L I +  K + V ++YS L+GRP
Sbjct: 339 SESGTLDLFIFLGPKASDVYESYSALVGRP 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,679
Number of Sequences: 5004
Number of extensions: 45958
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)