Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O06
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0487 + 17691963-17692048,17693337-17693448,17694128-176943...    29   2.1  

>08_02_0487 +
           17691963-17692048,17693337-17693448,17694128-17694314,
           17694848-17695347,17695480-17695593,17696065-17696220,
           17696306-17696395
          Length = 414

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +2

Query: 287 LSMDRILSRASSKIAGV*FDFTPYLRTPGLITFAFCVAF---Y*PFLYLIQISATHTFFL 457
           + + ++ +R   +I  +  DF  YLR   LI      ++      FL++ Q ++T +FFL
Sbjct: 46  IDLQKVAARIEERIYKIAIDFGDYLRRISLIKGDLDDSYPLMLNNFLHIHQQASTSSFFL 105

Query: 458 LITVNRKGAKVLKTYSQLIGRPNS 529
           L   N++G ++++    + G  +S
Sbjct: 106 LHQKNKQG-QIIQAEGNVQGTSSS 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,032
Number of Sequences: 37544
Number of extensions: 252188
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)