Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O05
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    31   0.12 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   4.7  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   8.2  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 22  SIWWMLRKGRLMAWGLGRPRLHIRQSFKLSEACL-VEGG 135
           S WW+ RK  L +W + R R HIR + K  +    V GG
Sbjct: 110 SNWWLYRKSPLKSWWIER-RHHIRHNLKCDKVIFYVHGG 147


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -3

Query: 431 KLQNLRTNPPPSGGTAFVNDAYEDDLSDDSSQLYTIIDYQEVCAALTRV 285
           +++NL +   PS  T+F+N + + +  DD+  L +I+    + + ++ V
Sbjct: 72  RIENLHSETFPSDYTSFLNQSPKKNDFDDNMSLNSIVTMGSILSNVSSV 120


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 46  GRLMAWGLGRPRLHIRQSFKLSEACLVEGGDSPGLF 153
           G  + +GLG   L I +SF     C+ +  D  GLF
Sbjct: 236 GHKLVYGLGS-NLFIWESFSEPPVCITDQSDLDGLF 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,113
Number of Sequences: 5004
Number of extensions: 47079
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)