Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_O02
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 29 0.63
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 4.4
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 5.9
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 285 ILKNETVISK-LHFIYNNDNFYLELFIFLGVNCTVPMV*AQQMAQDSTIETSTT 443
+L+NET + + LH + F+L + +F + T+P + + Q T E S+T
Sbjct: 52 VLRNETPLEEILHDATDLVTFHLVIAVFNSTSTTLPSATSSSVPQSRTSELSST 105
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 96 QYI*KNIIKNSDQSFYTNILXAVVINFNRRKIVETSNSRNNISNIYHY 239
Q+I K + K + F+T + ++ ++ RK+ E + ++ IS IY +
Sbjct: 141 QFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDF 188
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 341 FLFRTLYIFRGQLYSANGVSTTNGTGLHHRDINN 442
FLF L + + +S++ ST+ + HH IN+
Sbjct: 12 FLFTILAFAQARSHSSSSSSTSKSSASHHSSINS 45
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 132 QSFYTNILXAVVINFNRRKIVE--TSNSRNNISNIYHYF*QSS 254
Q+F T++L A+ F+ ++ T+NS ++++N++H Q S
Sbjct: 249 QTFGTSLLIALTDTFSTDVFLKSFTANSADDLANVFHGVRQDS 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,666
Number of Sequences: 5004
Number of extensions: 50106
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -