Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_O02
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024...    28   8.0  

>06_03_1458 +
           30301585-30301775,30302131-30302245,30302345-30302430,
           30302552-30302662,30303154-30303208,30303327-30303437,
           30304347-30304403,30304847-30305016,30305103-30305210,
           30305643-30305716,30305757-30305779,30306188-30306283,
           30306502-30306582,30306934-30307068,30307162-30307227,
           30307283-30307297
          Length = 497

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 144 TNILXAVVINFNRRKIVETSNSRNNISNIYHY--F*QSSSSKTLAGI*LILKNETV-ISK 314
           T  L A+V   + + +++ +   + I    H   F      K L  +  +L N  + I +
Sbjct: 141 TTALKALVRQASSKNLLDDNQDIDAILRPMHEITFASDDKPKGLTQLSSLLGNLNLDIKE 200

Query: 315 LHFIYNNDNFYLELFIFLG 371
           +H +  ND ++L++FI +G
Sbjct: 201 VHALSTNDGYFLDIFIVIG 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,843
Number of Sequences: 37544
Number of extensions: 238347
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)