Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_N23
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   6.6  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 516 YLFSYTYMYIKIFYLQSIFNTLFTSNVFNLYLCFMFV-*CTFYYGNIQKSNLLHNMLIII 340
           +  S+++ +  +F+L  IF   F+S     +L F F+  C F       S+LL   ++ +
Sbjct: 125 FFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFL 184

Query: 339 RFLSNICRLMFKF*DLLVRC 280
             L  +   + +   L   C
Sbjct: 185 PLLLRVFSTLSRLPRLFCLC 204


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 141 KSQYFFIKHLFLFKLNLTAYYFSLQKYIWNLDTFYWLARL 260
           KS +  I   F   ++L    +    Y+WN+  F W+ +L
Sbjct: 102 KSWFSTIVSTFTLAVDLLIIKYDGLSYLWNITKFPWMDKL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,114
Number of Sequences: 5004
Number of extensions: 56631
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)