Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_N22
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 183 2e-47
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 183 2e-47
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 31 0.12
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.35
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 2.5
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 3.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 4.4
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 7.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.6
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 183 bits (445), Expect = 2e-47
Identities = 82/142 (57%), Positives = 106/142 (74%)
Frame = -1
Query: 552 CGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHC 373
CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK A+R GRH
Sbjct: 17 CGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHT 76
Query: 372 GFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKR 193
G+GKR+GTA ARMP +W R + KID+HLYH+LY++AKGN FK+KR
Sbjct: 77 GYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKR 136
Query: 192 VLMEYIHRKKAEKARTKMLSDQ 127
L+E+I R KAE RTK++ +Q
Sbjct: 137 ALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 183 bits (445), Expect = 2e-47
Identities = 82/142 (57%), Positives = 106/142 (74%)
Frame = -1
Query: 552 CGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHC 373
CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK A+R GRH
Sbjct: 17 CGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHT 76
Query: 372 GFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKR 193
G+GKR+GTA ARMP +W R + KID+HLYH+LY++AKGN FK+KR
Sbjct: 77 GYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKR 136
Query: 192 VLMEYIHRKKAEKARTKMLSDQ 127
L+E+I R KAE RTK++ +Q
Sbjct: 137 ALIEHIQRAKAEANRTKLIQEQ 158
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 31.1 bits (67), Expect = 0.12
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 457 TILDHLTDVLSGVGVCDLIDFIWIQPHLLFTTN 555
+I +H++DV G+ V LI+ + I+P +LF N
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILFKAN 383
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.35
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 398 SVFLRTRAREWTATGFLMTRPSLIILRMFC 487
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = +1
Query: 52 FLLLGGNT-----FLAALACLLYFIAAGL 123
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 321 VPSVAYAHWQYLFSYQS 371
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 161 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 253
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = -1
Query: 540 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 394
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 393 RRKGR 379
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 486 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 370
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,635
Number of Sequences: 5004
Number of extensions: 46248
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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