Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_N19
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    66   1e-11
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.83 
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    27   4.5  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.9  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.9  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   5.9  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   7.8  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 38/79 (48%), Positives = 41/79 (51%)
 Frame = -1

Query: 352 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 173
           MPPKKD K     P                            LNN VLFD+ TY+KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57

Query: 172 VPQYKLITPAVVSERLKVR 116
           V  YKLITP+VVSERLKVR
Sbjct: 58  VITYKLITPSVVSERLKVR 76



 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 108 LARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 4
           LA+  L EL+ KGL+K VV HHGQV+YTRATK  D
Sbjct: 79  LAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEAD 113


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 341 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 240
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 62
            protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 371  LSFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 237
            ++FQ +++ QE        A  NT ++     + SQ  EVV ++S
Sbjct: 1076 MAFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 300 RRRRKDPVAAKPRRRSGP 247
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 300 RRRRKDPVAAKPRRRSGP 247
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = +1

Query: 169 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 288
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 298 SVFFEAVWPKPSR 336
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,159,555
Number of Sequences: 27780
Number of extensions: 187665
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)