Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_N12
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   1.3  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   4.0  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   5.3  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   5.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.3  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 217  DAKELKEHIRE-ALETECAKCTEAQKKGTRRVIGHLINNESESWNELTAK 71
            D KEL   +RE  L  + A+C +      +   G  I+N+  +WN+L  K
Sbjct: 1636 DWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFK 1685


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
 Frame = -2

Query: 151 AQKKGTRRVIGHLINN---ESESWNELTAK 71
           AQ+ G+R+++  ++NN   ESE + ++TA+
Sbjct: 725 AQQVGSRQIVERVVNNFKDESEPYRKMTAE 754


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -2

Query: 217 DAKELKEHIREALETECAKCTEAQKKGTRRVIGHLI-----NNESESWNELTAKYDP 62
           D+K+L E      E E  K  E +K+  +R+I  L+     + E+E W  L  +  P
Sbjct: 313 DSKKLVEMYLNYQENEPEKALELEKRYGKRIIDRLVEQVKNDEEAEKWVLLNGQRCP 369


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 331 DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 239
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 331 DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 239
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 425 PVQRYYLTHHQYEFPH 378
           P QR  L+H Q++FPH
Sbjct: 766 PQQRAILSHVQWDFPH 781


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 29  LLFVFGCKFIFGVVFSGQLIPGFAFV 106
           LLF F C +IF +V   + +  F  +
Sbjct: 299 LLFTFECLYIFSLVIDQETLSSFELI 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,247
Number of Sequences: 5004
Number of extensions: 37283
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)