Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_N12
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    28   4.1  
09_02_0171 - 5294555-5294572,5294815-5294839,5295484-5295526,529...    28   4.1  
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907...    28   5.4  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    27   7.1  
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748...    27   9.4  

>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 271 RLLQPYIKCILDTDRCAPDAKELKEHIREALE 176
           ++LQ     I D  RCAPD   L +H+ EAL+
Sbjct: 295 KVLQELAVSIRDHHRCAPDV--LSDHLHEALQ 324


>09_02_0171 -
           5294555-5294572,5294815-5294839,5295484-5295526,
           5296388-5296651,5296941-5297019,5297653-5297727
          Length = 167

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 316 DRYDNVNLDEVLSNSRLLQPYIKCILDTDRCAPDAKELKEHIREALETEC 167
           DR D  +L  VL   R   P+   I+DT     + KE +E  R+ +E EC
Sbjct: 71  DRMDVTDLTTVL---RKKMPHTYIIIDTVTQVDEKKEKEEKDRKKMEEEC 117


>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
            16090771-16090974,16091403-16091504,16091710-16091741,
            16092668-16093655,16094461-16094711,16095786-16097795,
            16097903-16097954
          Length = 1347

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 174  PNARNVPKPRRRVL 133
            P A NVP+PRRRVL
Sbjct: 1013 PGAANVPRPRRRVL 1026


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 233 GQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPSN 111
           G VC      EG  + G R R RE+     E YS C RPS+
Sbjct: 221 GSVCVAERRREGRGEEGRR-RSRELMEMEMEMYSRCARPSH 260


>07_03_0061 +
           12972944-12973054,12974509-12974536,12974701-12974870,
           12975878-12976043,12976122-12976425,12977155-12977350,
           12977464-12977622,12978311-12978371,12978904-12978967,
           12979099-12979346,12980039-12980250,12980344-12980456,
           12980547-12980623,12980710-12980873,12981493-12981564,
           12981565-12981760,12981813-12981854,12982358-12982440,
           12982534-12982671,12982942-12983124,12983216-12983263
          Length = 944

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 193 IREALETECAKCTEAQKKGTRRVIGHLINNESESW 89
           + ++  T C +C E  KKGT RV   L   E + W
Sbjct: 84  VAKSARTSCRRCGEKIKKGTVRVSSKL---EGQGW 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,486
Number of Sequences: 37544
Number of extensions: 247191
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)