Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_N11
(756 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.33
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.33
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.44
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.58
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.77
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 4.1
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 5.4
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 7.1
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 21 9.4
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 9.4
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.33
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 87 HVDIPYNILDTDKPLFYTNNII 22
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.33
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 87 HVDIPYNILDTDKPLFYTNNII 22
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.44
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 93 PSHVDIPYNILDTDKPLFYT-NNIISTVL 10
P+ DI + I+ K LFYT N I+ TVL
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVL 246
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.4 bits (53), Expect = 0.58
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 87 HVDIPYNILDTDKPLFYTNNII 22
++DI +NI K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 105 PARAPSHVDIPYNILDTDKPLFYTNNII 22
P + DI +NI K LFYT N+I
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLI 257
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.4 bits (48), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 81 DIPYNILDTDKPLFYTNNII 22
DI +NI K LFYT N+I
Sbjct: 225 DIVFNITLRRKTLFYTVNLI 244
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 81 DIPYNILDTDKPLFYTNNII 22
DI +NI K LFYT N+I
Sbjct: 224 DIFFNITLRRKTLFYTVNLI 243
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 22.2 bits (45), Expect = 5.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 283 PEEGHGVEDITTRHIFSYKIVT 218
P EG + D RHI I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 81 DIPYNILDTDKPLFYTNNII 22
DI Y I +P+FY N+I
Sbjct: 202 DITYEIRLRRRPMFYVFNLI 221
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 21.4 bits (43), Expect = 9.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +3
Query: 429 SCHTASDIPGNLHTLPGLCLSLLG 500
S T ++ LHT+ +C+ +G
Sbjct: 15 SAMTLDELKSGLHTVQSVCMKEIG 38
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 554 QRRRARSCSHSKSSFPSTAKQRKTKTRER 468
+R+R S ++S S A KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,568
Number of Sequences: 438
Number of extensions: 3543
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -