Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_M23
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 164 2e-42
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.21
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 1.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 2.6
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 3.4
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 24 5.9
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 24 5.9
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.9
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 23 7.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 7.9
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 164 bits (399), Expect = 2e-42
Identities = 76/93 (81%), Positives = 88/93 (94%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT TSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRKTP GEGSKTW+ +
Sbjct: 21 RITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETY 80
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
+MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 81 EMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVE 113
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.21
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 218 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 66
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 1.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 113 MRIHKRVIDLHSPSEIVKQITSINIEPGV 27
+R+H+R I L + S+ ++ + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 2.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 207 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 91
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 3.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 161 RKTPCGEGSKTWDRFQM 111
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 82 CRSITLLWIRI*KRSQVFEPSPQ 150
C + L W+ KRSQ PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -3
Query: 164 TRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIE 36
T++ PC S+ + + + +R++D + + Q+TS+ IE
Sbjct: 150 TKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIE 192
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 156 NSLW*RFKDLGSFSDANPQESDRPTL 79
N+ W RFK+ G + D + E + P+L
Sbjct: 35 NNEW-RFKNAGEYFDEDNNEEEYPSL 59
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 263 LEKVCADLINGAKKQKLRVKGP 198
LE +C D I + KL++KGP
Sbjct: 262 LESLCTDDILFEENIKLKIKGP 283
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 135 KDLGSFSDANPQESDRPTLSL*NCET 58
KDL ++ ANP RP + L C++
Sbjct: 570 KDLVKYNPANPIPVPRPRVDLTQCKS 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,360
Number of Sequences: 5004
Number of extensions: 23963
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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