Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_M23
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 153 2e-38
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 153 2e-38
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 152 5e-38
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 44 2e-05
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 0.98
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 27 3.0
01_05_0426 + 22042215-22042595,22044846-22045688 27 3.0
05_05_0026 + 21645845-21647404 27 4.0
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777... 27 4.0
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 25 9.2
07_01_0814 - 6464072-6464544,6464770-6465208 25 9.2
03_03_0225 - 15587557-15588774 25 9.2
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 25 9.2
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 153 bits (372), Expect = 2e-38
Identities = 69/93 (74%), Positives = 83/93 (89%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT +S+NV++LEKVCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TWDRF
Sbjct: 32 RITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRF 91
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
+ RIHKRVIDL S ++VKQITSI IEPGVEVE
Sbjct: 92 EFRIHKRVIDLISSPDVVKQITSITIEPGVEVE 124
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 153 bits (372), Expect = 2e-38
Identities = 69/93 (74%), Positives = 83/93 (89%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT +S+NV++LEKVCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TWDRF
Sbjct: 29 RITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRF 88
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
+ RIHKRVIDL S ++VKQITSI IEPGVEVE
Sbjct: 89 EFRIHKRVIDLISSPDVVKQITSITIEPGVEVE 121
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 152 bits (369), Expect = 5e-38
Identities = 67/93 (72%), Positives = 83/93 (89%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT +S++V++LEKVC DL+ GAK + L+VKGPVRMPTK+L ITTRK+PCGEG+ TWDRF
Sbjct: 30 RITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRF 89
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
+MR+HKRVIDL S +++VKQITSI IEPGVEVE
Sbjct: 90 EMRVHKRVIDLVSSADVVKQITSITIEPGVEVE 122
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RI S V +E C +I AK + GPV +PTK +P + F
Sbjct: 336 RIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF-HF 394
Query: 116 QMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVE 18
++R H+R+ID+ P ++ + + + + GV+VE
Sbjct: 395 EIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVE 428
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 273 CALTREGLC*PNQWSQETEAACKGPSP 193
C L EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 276 QCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 172
+CAL R+G +W ET C G P+P +QDPA
Sbjct: 19 ECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -2
Query: 294 DHXYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYH 166
DH A TR G+ E P PH PAYH
Sbjct: 13 DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55
>05_05_0026 + 21645845-21647404
Length = 519
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 220 CFLAPLIRSAQTFSSERTL 276
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>03_06_0677 +
35476009-35476014,35476974-35477474,35477574-35477762,
35477925-35477945
Length = 238
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 243 PNQWSQETEAACKGPSPHANQDPAYHHP 160
PN +TEA K HA DPA P
Sbjct: 41 PNNHHGDTEALSKASPLHAGSDPAMRKP 68
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 140 GSKTWDRFQMRIHKRVIDLHSPS 72
G ++W R RIH RV H P+
Sbjct: 298 GLESWSRLVKRIHVRVPPCHRPA 320
>07_01_0814 - 6464072-6464544,6464770-6465208
Length = 303
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 227 KKQKLRVKGPVRMPTKILRITTRKTPC 147
+K+ +KG PT LR+T RK C
Sbjct: 217 QKELAELKGETPPPTPKLRLTARKRTC 243
>03_03_0225 - 15587557-15588774
Length = 405
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 59 VSQFQRESVGRSLSC 103
V Q+QRE VGR+L C
Sbjct: 179 VHQYQRELVGRALKC 193
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 231 SQETEAACKG-PSPHANQDPAYHHP 160
+++ EAA KG PSPH Q +HHP
Sbjct: 102 ARKGEAAAKGAPSPHP-QPVHHHHP 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,039,121
Number of Sequences: 37544
Number of extensions: 179361
Number of successful extensions: 405
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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