Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_M23
(310 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 177 4e-45
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 177 4e-45
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 177 4e-45
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 177 4e-45
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 126 2e-29
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 3.7
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 3.7
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 3.7
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 3.7
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 3.7
AY211919-1|AAO65172.1| 253|Homo sapiens sarcoma antigen NY-SAR-... 28 6.4
AY950604-1|AAX22134.1| 36|Homo sapiens MHC class II antigen pr... 27 8.5
AY375860-1|AAQ88034.1| 220|Homo sapiens MHC class II antigen pr... 27 8.5
AF307155-1|AAK17122.1| 32|Homo sapiens MHC class II HLA-DQ-bet... 27 8.5
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 177 bits (432), Expect = 4e-45
Identities = 83/93 (89%), Positives = 89/93 (95%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT TSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRF
Sbjct: 21 RITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRF 80
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
QMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 81 QMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 177 bits (432), Expect = 4e-45
Identities = 83/93 (89%), Positives = 89/93 (95%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT TSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRF
Sbjct: 21 RITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRF 80
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
QMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 81 QMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 177 bits (432), Expect = 4e-45
Identities = 83/93 (89%), Positives = 89/93 (95%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT TSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRF
Sbjct: 21 RITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRF 80
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
QMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 81 QMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 177 bits (432), Expect = 4e-45
Identities = 83/93 (89%), Positives = 89/93 (95%)
Frame = -3
Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
RIT TSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRF
Sbjct: 21 RITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRF 80
Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
QMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 81 QMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 126 bits (303), Expect = 2e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = -3
Query: 206 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 27
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 51
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 51
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 51
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 51
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 51
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
>AY211919-1|AAO65172.1| 253|Homo sapiens sarcoma antigen NY-SAR-48
protein.
Length = 253
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -3
Query: 236 NGAKKQKLRVKGPVRMPTKILRI---TTRKTPCGEGSKT 129
+ AKK+ RV+G + ++ L+ TT+K P G+GS+T
Sbjct: 24 SSAKKKDKRVQGGRVIESRYLQYEKKTTQKAPAGDGSQT 62
>AY950604-1|AAX22134.1| 36|Homo sapiens MHC class II antigen
protein.
Length = 36
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEG 138
K+ LR+ G +R PT L + TP EG
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEG 32
>AY375860-1|AAQ88034.1| 220|Homo sapiens MHC class II antigen
protein.
Length = 220
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 51
K+ LR+ G +R+ T L + TP EG + + F + K + + +E+V+ +T
Sbjct: 4 KKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQF-KGMCYFTNGTELVRGVT 60
>AF307155-1|AAK17122.1| 32|Homo sapiens MHC class II HLA-DQ-beta
protein.
Length = 32
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 224 KQKLRVKGPVRMPTKILRITTRKTPCGEG 138
K+ LR+ G +R PT L + TP EG
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEG 32
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,786,570
Number of Sequences: 237096
Number of extensions: 1030611
Number of successful extensions: 1846
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -