Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M23
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   161   9e-41
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   0.66 
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    26   4.7  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    26   6.2  
U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine rece...    26   6.2  
AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical ...    26   6.2  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    26   6.2  
Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.      25   8.1  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  161 bits (391), Expect = 9e-41
 Identities = 70/93 (75%), Positives = 87/93 (93%)
 Frame = -3

Query: 296 RITXTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRF 117
           R+T TS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTWDRF
Sbjct: 20  RLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTWDRF 79

Query: 116 QMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 18
           QMRIHKR+I+LH+P+E+++QITSI+IEPGV++E
Sbjct: 80  QMRIHKRLINLHAPAEVLRQITSISIEPGVDIE 112


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 263 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 141
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
           protein K08B12.2b protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 68  FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 163
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 68  FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 163
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 278 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 153
           R+ +S  KVC   L  GAKK++        +  KIL IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -3

Query: 239 INGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD-RFQMRIHKRVIDLHSPSEIV 63
           I+G K+   R+K    M  K ++I   +TP  E  K    R + RI KR  ++H  +   
Sbjct: 50  IDGQKENPKRIKMSQHMTAKEVKIPLLRTPDEEARKIEKLRREARI-KRSKEVHYDAAEQ 108

Query: 62  KQITSINIEPGVEVE 18
           +QI  +N E  V++E
Sbjct: 109 QQI-MMNYEWTVQME 122


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -3

Query: 221  QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 45
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -3

Query: 221  QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 45
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 92  SLSCGFASENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSWL 232
           SL+  F ++ + RSL L  K      +A   + CG+G L  A++ W+
Sbjct: 235 SLAIRFQAKENARSLQLAKKVVL---FAAFAILCGMGLLILAAMHWI 278


>AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical
           protein F59E11.8 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 196 TGPFTRSFCFLAPLIRSAQTFSSERTLREVXV 291
           + P T+SF  L+PL+ + +T  S+   +EV +
Sbjct: 15  SSPETKSFIDLSPLLVTMETILSDNRRKEVPI 46


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -3

Query: 221  QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 45
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical
           protein T23G7.1 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 195 PHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESDRPT 82
           P + QD +++ P    W     +G  S A  Q+SD+PT
Sbjct: 36  PRSYQDESHNEPVG--WDEPSGVGGSSGAGGQQSDKPT 71


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 221 QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 69
           Q  R    VR+PT+IL   +  +  G   K+   F+ ++  +      PS+
Sbjct: 611 QTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKVGPKTSSTSHPSD 661


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 221 QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 69
           Q  R    VR+PT+IL   +  +  G   K+   F+ ++  +      PS+
Sbjct: 611 QTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKVGPKTSSTSHPSD 661


>AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 195 PHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESDRPT 82
           P + QD +++ P    W     +G  S A  Q+SD+PT
Sbjct: 36  PRSYQDESHNEPVG--WDEPSGVGGSSGAGGQQSDKPT 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,362,289
Number of Sequences: 27780
Number of extensions: 142285
Number of successful extensions: 256
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)