Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M19
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1350 - 35850020-35850073,35850430-35850519,35850963-358509...    28   5.9  

>02_05_1350 -
           35850020-35850073,35850430-35850519,35850963-35850987,
           35851390-35851430,35852089-35852108,35852999-35853113,
           35853114-35853259,35853535-35853586
          Length = 180

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 9   NLFLHALILKSVLLIKWQSIVVLL---THITWH 98
           +L LH+ IL S  L+ WQSI+ +    + + WH
Sbjct: 38  DLGLHSAILLSHFLVNWQSILTVAGFPSQVRWH 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,751
Number of Sequences: 37544
Number of extensions: 224695
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)