Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M19
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine r...    27   9.1  

>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 109 SVHWCQVMCVSSTTILCHLINNT 41
           S HWC V     TT+ C  + NT
Sbjct: 543 SSHWCHVGITPDTTVCCSAVQNT 565


>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 94  GTSVHSINLCLFNIAVTLLYQYCSHSQKHYK*HIKKTSH 210
           G ++    LC+  ++V  L+Q C+ +  H + H++  +H
Sbjct: 189 GNNMDMACLCIITLSVEKLHQLCNLNINHQESHLQDVTH 227


>AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine
           receptor, class t protein31 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 103 VHSINLCLFNIAVTLLYQYCSHSQKHYK*HIKKTSHKKNQFGH-TLTIIYL 252
           + S+ +C FN+  +LLY Y +  +  Y   I   +H   + GH     IYL
Sbjct: 245 IQSVLICGFNLTASLLYVYMNFFEAPYS--IVVVAHINWELGHGAPAFIYL 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,602
Number of Sequences: 27780
Number of extensions: 240670
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)