Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M15
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm recept...    28   7.0  
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical
           protein M03C11.2 protein.
          Length = 848

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 21  TLILHYRLIQSYYFCSKLKIYIHMYTYTSQLLDINSNMNLSYENRYHNDI 170
           +L L  RLI+ Y    KLK+  H   Y  QL  + S M +   ++   D+
Sbjct: 390 SLTLALRLIREYNAHYKLKLLAHNLLYMKQLESLTSKMLIFLNSQSKEDV 439


>U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm receptor
           protein 177 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -1

Query: 641 SLAVNSFPC*YNKKKKFE---HVSSDLIVKEAVMFLADLFRLLAIRFMIPFETQYTNIRI 471
           S AV  F C Y   KK      VSS+   K+       LF  L ++  IPF   Y    +
Sbjct: 215 SSAVTVFICGYGCYKKITKGLEVSSNS--KQTKSIQKQLFYALVVQSAIPFLLMYIPSTV 272

Query: 470 IKFCVFI 450
           + FC  I
Sbjct: 273 VLFCTLI 279


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 24  LILHYRLIQSYYFCSKLKIYIHMYTYTSQLLDINSNMNLSYENRYHNDISSFPFHACKNT 203
           LIL  R+I + Y     +  +  Y Y S +  I  NMN  + + Y       P  +CK  
Sbjct: 136 LILCLRIIYTVYIAFDPRFLL--YAYKSFVTVITGNMNWIHCDDYKGVRCFDPTWSCKIN 193

Query: 204 HFKLDRE 224
            F+L+ E
Sbjct: 194 EFRLNGE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,161
Number of Sequences: 27780
Number of extensions: 303052
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)