Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M12
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 570 KFFG*GSFVWGNCNFRFSEYLDFLIYVICC 659
           K FG   F+WG+C+   ++Y +FL+++  C
Sbjct: 216 KKFGHPIFIWGSCSNTPTKYENFLVFLSWC 245


>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 463 QQPSVQFYDYSYAVAVYTTSMVIYVKLLFSVLLNSSI*NRCC 338
           ++P V+FY+ S     Y+  M I + L+F++ L   +  RCC
Sbjct: 525 RKPVVRFYEESSKYHQYSY-MTISILLIFTIFLTGYLFGRCC 565


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 KQIIKHYTNSKNYNIYFKYWSLTTLKTRVLRKSPY 405
           K+  K Y N+  YN Y KY  L  + ++ +  +P+
Sbjct: 456 KEYEKEYENNSYYNGYLKYGQLMRIDSKFVLPAPF 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,532
Number of Sequences: 27780
Number of extensions: 289523
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)