Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_M11
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical p... 43 6e-05
U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical pr... 34 0.023
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 31 0.28
AF016668-4|AAO12440.1| 222|Caenorhabditis elegans Hypothetical ... 31 0.28
Z66561-8|CAI79121.1| 137|Caenorhabditis elegans Hypothetical pr... 29 0.85
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 28 1.5
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 28 1.5
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 28 1.5
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 28 1.5
U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of s... 28 2.0
Z99288-10|CAB16552.2| 338|Caenorhabditis elegans Hypothetical p... 27 2.6
Z81483-7|CAB03964.2| 338|Caenorhabditis elegans Hypothetical pr... 27 2.6
AC024817-39|AAP68916.1| 128|Caenorhabditis elegans Hypothetical... 27 3.4
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 26 6.0
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 26 6.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 26 6.0
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 26 7.9
U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifyi... 26 7.9
>Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical
protein F53C11.9 protein.
Length = 80
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -3
Query: 261 QYFIVFLIVAVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHC 88
+YF+ L+V + L + + C EN + D PC RTC++P N C+ C C
Sbjct: 2 KYFLFSLLV-LATLSFALAKNQCGENEIFNDCGSPCDRTCENP---NPMCIQMCKARCEC 57
Query: 87 NDGLVFNADKKMCAHF*LLKC 25
G V +++ K C L KC
Sbjct: 58 KQGFVVDSNTKKCID--LKKC 76
>U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical
protein C25E10.7 protein.
Length = 145
Score = 34.3 bits (75), Expect = 0.023
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 231 VMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNA 64
V LE + CPE+ + C TCDDPY T+ + C C GLV N+
Sbjct: 66 VRRLECTAETSRCPEDEVFQTCGTLCQPTCDDPYPTSCEHDRCIRNVCRCLPGLVRNS 123
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = -3
Query: 261 QYFIVF--LIVAVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTC 94
QY ++ L++ A ++T + C EN + C TC P T T C + C
Sbjct: 2 QYIVLLSVLLIGANAQLSATRDQECKENESFQTCGTACEPTCGLP--TPTFCTLQCVMGC 59
Query: 93 HCNDGLVFNADKKMC 49
CN G C
Sbjct: 60 QCNSGFFRRTSDNRC 74
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = -3
Query: 261 QYFIVF--LIVAVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTC 94
QY ++ L++ A ++T + C EN + C TC P T T C + C
Sbjct: 2 QYIVLLSVLLIGANAQLSATRDQECKENESFQTCGTACEPTCGLP--TPTFCTLQCVMGC 59
Query: 93 HCNDGLVFNADKKMC 49
CN G C
Sbjct: 60 QCNSGFFRRTSDNRC 74
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = -3
Query: 261 QYFIVF--LIVAVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTC 94
QY ++ L++ A ++T + C EN + C TC P T T C + C
Sbjct: 2 QYIVLLSVLLIGANAQLSATRDQECKENESFQTCGTACEPTCGLP--TPTFCTLQCVMGC 59
Query: 93 HCNDGLVFNADKKMC 49
CN G C
Sbjct: 60 QCNSGFFRRTSDNRC 74
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = -3
Query: 261 QYFIVF--LIVAVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTC 94
QY ++ L++ A ++T + C EN + C TC P T T C + C
Sbjct: 2 QYIVLLSVLLIGANAQLSATRDQECKENESFQTCGTACEPTCGLP--TPTFCTLQCVMGC 59
Query: 93 HCNDGLVFNADKKMC 49
CN G C
Sbjct: 60 QCNSGFFRRTSDNRC 74
>AF016668-4|AAO12440.1| 222|Caenorhabditis elegans Hypothetical
protein F36H9.4 protein.
Length = 222
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -3
Query: 249 VFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVF 70
+F++ A ++ A+ + G E+ C C + ++ + ++ C C DG
Sbjct: 10 IFILFA--SVLAAPKKCGPNEDFKECGTACEANCAEGHVM-FCTMQCIVNVCQCKDGFFR 66
Query: 69 NADKKMCAHF*LLK 28
N DKK CAH L++
Sbjct: 67 NKDKK-CAHVELIR 79
>Z66561-8|CAI79121.1| 137|Caenorhabditis elegans Hypothetical
protein F08G12.11 protein.
Length = 137
Score = 29.1 bits (62), Expect = 0.85
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 189 ENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHC 88
EN ++ C T D+P + +C G L++ C C
Sbjct: 19 ENRCVQEENCTLTVDNPGINTKSCEGYLMEECAC 52
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 AHIFLSALKT--KPSLQWQV*MRAPTQAVLVRYG 142
A +FL L T KP+L W V + P VL+ YG
Sbjct: 38 AFVFLIILVTLAKPTLHWPVLRKLPESVVLMLYG 71
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 AHIFLSALKT--KPSLQWQV*MRAPTQAVLVRYG 142
A +FL L T KP+L W V + P VL+ YG
Sbjct: 103 AFVFLIILVTLAKPTLHWPVLRKLPESVVLMLYG 136
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 AHIFLSALKT--KPSLQWQV*MRAPTQAVLVRYG 142
A +FL L T KP+L W V + P VL+ YG
Sbjct: 38 AFVFLIILVTLAKPTLHWPVLRKLPESVVLMLYG 71
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 AHIFLSALKT--KPSLQWQV*MRAPTQAVLVRYG 142
A +FL L T KP+L W V + P VL+ YG
Sbjct: 103 AFVFLIILVTLAKPTLHWPVLRKLPESVVLMLYG 136
>U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 2, isoform a
protein.
Length = 135
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 252 IVFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPY-LTNTACVG-ALIQTCHCNDG 79
I+ +I ++A+ +T C N C TC+ T AC ++ TC C DG
Sbjct: 3 ILVIITCIVAVATATKT--CEANEELVS--CHNTCEPQCGYTPKACTEQCIMNTCDCKDG 58
Query: 78 LVFNA 64
V N+
Sbjct: 59 FVRNS 63
>Z99288-10|CAB16552.2| 338|Caenorhabditis elegans Hypothetical
protein ZK262.11 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 288 KNITKMAAKQYFIVFLIVAVMALEASTTEYGCP 190
K +MAA +++++ + V+VMAL+ S T G P
Sbjct: 43 KTPLQMAAVKWYLLQMHVSVMALDYSVTVVGIP 75
>Z81483-7|CAB03964.2| 338|Caenorhabditis elegans Hypothetical
protein C43D7.6 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 288 KNITKMAAKQYFIVFLIVAVMALEASTTEYGCP 190
K +MAA +++++ + V+VMAL+ S T G P
Sbjct: 43 KTPLQMAAVKWYLLQMHVSVMALDYSVTVVGIP 75
>AC024817-39|AAP68916.1| 128|Caenorhabditis elegans Hypothetical
protein Y54G2A.36 protein.
Length = 128
Score = 27.1 bits (57), Expect = 3.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 120 CVGALIQTCHCN 85
C+GAL+ TC+CN
Sbjct: 40 CIGALVGTCNCN 51
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 144 DPYLTNTACVGALIQTCHCNDGLVFNADK 58
D Y N C G I+ C+D +FN +K
Sbjct: 542 DLYKKNGTCKGRRIEGAPCSDISIFNVEK 570
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 120 CVGALIQTCHCNDGLVFNADKKMC 49
CV + C +GL F+AD MC
Sbjct: 584 CVNGISYNFECPNGLSFHADTMMC 607
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 28 F*QSEMGTHFLVRVED*AVVTVAGLNEGADASGVSQVRVVAGPHAGVISP 177
F +SEM +V A + V GL+E S + ++ V AGP V P
Sbjct: 6 FLRSEMSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMP 55
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 186 NAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNAD 61
N H+ DDP V T D AC G +I N+ V++ D
Sbjct: 85 NQHFNDDPGVETSPDHV---RACTGIIIVKGATNNKNVYSLD 123
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +2
Query: 203 SVVLASRAITATIRNTIKYCLAAI 274
+++ A ++ ++T+R T+ YCL A+
Sbjct: 764 TIIKAYQSTSSTVRKTVVYCLVAM 787
>U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 2 protein.
Length = 514
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 274 DGRQTILYRVPDCRRDGSRGQHYRIWMP*KC 182
DG+ +L+RV D R+ H R+ M +C
Sbjct: 243 DGKLCLLFRVGDMRKSSLAEAHVRLQMIKRC 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,014,866
Number of Sequences: 27780
Number of extensions: 123778
Number of successful extensions: 392
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -